View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0385_high_2 (Length: 381)
Name: NF0385_high_2
Description: NF0385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0385_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 32961284 - 32960961
Alignment:
| Q |
12 |
agaagaacaaacacacgcaatgatgacccaataaaaatgctatagaaagtaaaacatcatgtaaactttatgtctaattgaagtaaacgaaagaaacaaa |
111 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32961284 |
agaagaacaaacacacacaatgatgacccaataaaaatgctatagaaagtaaaacatcatgtaaactttatgtctaattgaagtaaaagaaagaaacaaa |
32961185 |
T |
|
| Q |
112 |
tgatcattaataaagtctcattaagaggaatacagaagaaaacacaaagatacaatagtgnnnnnnncaaacacatgaaaaaggaacatagctagctttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32961184 |
tgatcattaataaagtctcattaagaggaatacagaagaaaacacaaagatacaatagtgaaaaaaacaaacacatgaaaaaggaacatagctagctttt |
32961085 |
T |
|
| Q |
212 |
cttcctagatacaaattctaatttttcttccaaacattcactccataaaggtctccataacatctgagtacatacctcctccttctgaattcctatactc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32961084 |
cttcctagatacaaattctaatttttcttccaaacatttactccataaaggtctccataacatctgagtacatacctcctccttctgaattcctatactc |
32960985 |
T |
|
| Q |
312 |
cacaccttgttgttgttgatgatg |
335 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
32960984 |
cacaccttgttgttgttgatgatg |
32960961 |
T |
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