View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0385_low_1 (Length: 471)
Name: NF0385_low_1
Description: NF0385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0385_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 95 - 460
Target Start/End: Original strand, 47540145 - 47540513
Alignment:
| Q |
95 |
cctatcacccaaacactgttcctttcctagaaaggctcctctgcaactat---atatacgagttgagaatcttgcattgtggcaataacaagaacttttt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
47540145 |
cctatcacccaaacactgttcctttcctagaaaggctcctctgcaactattatatatacgagttgagaatcttacattgtggcaatgacaagaacttttt |
47540244 |
T |
|
| Q |
192 |
tagggtcaagtagtcaggaagaagaacgtccaaaactacttctccatcttatacatttgttttcatttgtggtgttacacatgtgatgcactagctgtgg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47540245 |
tagggtcaagtagtcaggaagaagaacgtccaaaactacttctccatcttatacatttgttttcatttgtggtgttacacatgtgatgcactagctgtgg |
47540344 |
T |
|
| Q |
292 |
gtttgttgaattctgtgtggaccctaccgctaccaccgttgaattgcaagatcctaacagagcatctacagttgaaactcataatcaatagaagtatgta |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47540345 |
gtttgttgaattctgtgtggaccctaccgctaccaccgttgaattgcaagatcctaacagagcatctacagttgaaactcataatcaatagaagtatgta |
47540444 |
T |
|
| Q |
392 |
cattgcaagttcacaacaataatgtccagannnnnnnataattgacagtacatgtggcccccaagtata |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47540445 |
cattgcaagttcacaacaataatgtccagatttttttataattgacagtacatgtggcccccaagtata |
47540513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 47546673 - 47546750
Alignment:
| Q |
287 |
tgtgggtttgttgaattctgtgtggaccctaccgctaccaccgttgaattgcaagatcctaacagagcatctacagtt |
364 |
Q |
| |
|
||||| ||||||||||||||||||||||| || | |||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
47546673 |
tgtggatttgttgaattctgtgtggaccccactggtaccaccgttgacttgcatgatcctaacagagccgctacagtt |
47546750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 47539063 - 47539147
Alignment:
| Q |
154 |
ttgagaatcttgcattgtggcaataacaagaacttttttagggtcaagtagtcaggaagaagaacgtccaaaactacttctccat |
238 |
Q |
| |
|
||||||||| | ||||||||||| ||| ||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||| |
|
|
| T |
47539063 |
ttgagaatcatacattgtggcaaaaacgagaacttttttagggtcaagtagctaggagaaagaaggtctaaaactacttctccat |
47539147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 47546540 - 47546614
Alignment:
| Q |
181 |
aagaacttttttagggtcaagtagtcaggaagaagaacgtccaaaactacttctccatcttatacatttgttttc |
255 |
Q |
| |
|
||||||||||||||||||||| || || |||||||| ||||||||||||||||| | | ||||| |||||||||| |
|
|
| T |
47546540 |
aagaacttttttagggtcaagaagccatgaagaagatcgtccaaaactacttcttcttgttatagatttgttttc |
47546614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 47541431 - 47541484
Alignment:
| Q |
95 |
cctatcacccaaacactgt--tcctttcctagaaaggctcctctgcaactatat |
146 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
47541431 |
cctatcaccccaacactgtgttcctgtcctagaaaggctcctctgcaactatat |
47541484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 505 times since January 2019
Visitors: 3060