View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0385_low_10 (Length: 268)
Name: NF0385_low_10
Description: NF0385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0385_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 38316873 - 38317045
Alignment:
| Q |
1 |
gagtgcattgaaaaggttggtggtgttgatagttctgttcgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38316873 |
gagtgcattgaaaaggttggtggtgttgatagttctgtttgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctc |
38316972 |
T |
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| Q |
101 |
ttaaatatcggcatgtatttgaaagttttcacttgtatgatgataattacctgttatgtcctttagcacatga |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38316973 |
ttaaatatcggcatgtatttgaaagttttcacttgtatgatgataattaccagttatgtcctttagcacatga |
38317045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 38320968 - 38321130
Alignment:
| Q |
1 |
gagtgcattgaaaaggttggtggtgttgatagttctgttcgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |
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| T |
38320968 |
gagtgcgttgaaaaggttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctc |
38321067 |
T |
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| Q |
101 |
ttaaatatcggcatgtatttgaaagttttcacttgtatgatgataattacctgttatgtcctt |
163 |
Q |
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| T |
38321068 |
ttaaatataggtgtgtgtttgaaagtcttcacttgtatgatgataattatgagttatgtcctt |
38321130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 38325721 - 38325880
Alignment:
| Q |
4 |
tgcattgaaaaggttggtggtgttgatagttctgttcgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctctta |
103 |
Q |
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||||||||||||||||||||||| |||||||| |||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38325721 |
tgcattgaaaaggttggtggtgtcgatagttccgttcgcttgcatcaggactcgtctatgagtctgaactcaacttatttgatgcttgaaagtgctctta |
38325820 |
T |
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| Q |
104 |
aatatcggcatgtatttgaaagttttcacttgtatgatgataattacctgttatgtcctt |
163 |
Q |
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||||||||| ||| ||||||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
38325821 |
aatatcggcgtgtgtttgaaagtcttcacttgtatgaggataattatgagttatgtcctt |
38325880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 38308870 - 38309009
Alignment:
| Q |
1 |
gagtgcattgaaaaggttggtggtgttgatagttctgttcgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
38308870 |
gagtgcattgaaaaggttggtggtgttgatagttctgttcgtttgcatctagacatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctc |
38308969 |
T |
|
| Q |
101 |
ttaaatatcggcatgtatttgaaagttttcacttgtatga |
140 |
Q |
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||||||||| || || |||||||||| ||||||||||||| |
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| T |
38308970 |
ttaaatatcagcttgcatttgaaagtcttcacttgtatga |
38309009 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 38313464 - 38313612
Alignment:
| Q |
1 |
gagtgcattgaaaaggttggtggtgttgatagttctgttcgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
38313464 |
gagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctc |
38313563 |
T |
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| Q |
101 |
ttaaatatcggcatgtatttgaaagttttcacttgtatgatgataatta |
149 |
Q |
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||||||||| || || ||||||||| ||||||||||||||||| |||| |
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| T |
38313564 |
ttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatgatta |
38313612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 38306142 - 38306283
Alignment:
| Q |
1 |
gagtgcattgaaaaggttggtggtgttgatagttctgttcgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctc |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||| |||||| ||||| ||||||||||||||| | |||||||||||||| ||||||| || ||||||| |
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| T |
38306142 |
gagtgcgttgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctc |
38306241 |
T |
|
| Q |
101 |
ttaaatatcggcatgtatttgaaagttttcacttgtatgatg |
142 |
Q |
| |
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||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
38306242 |
ttaaatatcaacatgtgtttgaaagttttcacttgtatgatg |
38306283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 38300223 - 38300385
Alignment:
| Q |
1 |
gagtgcattgaaaaggttggtggtgttgatagttctgttcgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctc |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||| |||||| |||||||||||| | ||| || |||||||||||||| |||||||||||||||| |
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| T |
38300223 |
gagtgtattgcaaaggttggtggtgttgattgttccgttcgcttgcatctggacacgcctaaaagagtgaactcaacttattcaatgcttgaaagtgctc |
38300322 |
T |
|
| Q |
101 |
ttaaatatcggcatgtatttgaaagttttcacttgtatgatgataattacctgttatgtcctt |
163 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||||||||||||||| ||| |||||||||||| |
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| T |
38300323 |
ttaaatatcggcgtgtgtttgaaagtcttcacttgtatgatgatagttatgtgttatgtcctt |
38300385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 38850472 - 38850328
Alignment:
| Q |
1 |
gagtgcattgaaaaggttggtggtgttgatagttctgttcgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||| | | ||| |||| || ||||||||| ||| ||||||||| || |||||||||| |||| |
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| T |
38850472 |
gagtgctttgaaaaggttggtggtgttgatagttcggttcacttacatttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctc |
38850373 |
T |
|
| Q |
101 |
ttaaatatcggcatgtatttgaaagttttcacttgtatgatgata |
145 |
Q |
| |
|
||||||| ||| || |||||||||||||||||||||||||||| |
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| T |
38850372 |
ttaaataccggtgtgcgtttgaaagttttcacttgtatgatgata |
38850328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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