View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0385_low_11 (Length: 247)

Name: NF0385_low_11
Description: NF0385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0385_low_11
NF0385_low_11
[»] chr4 (5 HSPs)
chr4 (1-239)||(3746229-3746467)
chr4 (156-239)||(13538252-13538336)
chr4 (147-239)||(31351661-31351754)
chr4 (158-197)||(38415494-38415533)
chr4 (158-215)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (148-232)||(1028751-1028836)
chr8 (160-215)||(28300139-28300194)
chr8 (148-192)||(19756417-19756461)
[»] chr1 (1 HSPs)
chr1 (148-235)||(2098777-2098864)
[»] chr7 (6 HSPs)
chr7 (157-238)||(37307687-37307769)
chr7 (156-239)||(9667228-9667312)
chr7 (156-192)||(27227261-27227297)
chr7 (152-214)||(23982068-23982130)
chr7 (157-214)||(24250144-24250201)
chr7 (156-192)||(47684484-47684520)
[»] chr3 (3 HSPs)
chr3 (157-239)||(9737574-9737657)
chr3 (147-192)||(52910376-52910421)
chr3 (156-192)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (147-192)||(37123631-37123676)
chr2 (156-192)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3746229 - 3746467
Alignment:
Q  1 tttgatgctaactctagagaagccaaagtagtgaaggagagaagagaataatggaagatgaatgaagtgtagctaagaggggtttgtttataagacacca 100  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  3746229 tttgatgctaactctagagaaaccaaaatagtgaaggagagaagagaataatggaagatgaatgaagtgtagccaagaggggtttgtttataagacaaca 3746328  T
Q  101 aatatagagggagaaaagtgaactaaaaaggacaaaagannnnnnnatcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaa 200  Q
    | |||||||||||||||||||||||||||||||||||||       |||| |||| |||| ||||||||| | ||||||||| | ||||||||||| |||    
T  3746329 agtatagagggagaaaagtgaactaaaaaggacaaaagatttttttatcaagtaacctagcggctagatttacacacattatatgtggagaaatgggaaa 3746428  T
Q  201 tacagggttcgaacctcacccctacacataatatctctg 239  Q
    | | |||||||||||||||||||||||||||||||||||    
T  3746429 tccggggttcgaacctcacccctacacataatatctctg 3746467  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 13538252 - 13538336
Alignment:
Q  156 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 239  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  13538252 tctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 13538336  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 31351661 - 31351754
Alignment:
Q  147 atcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctg 239  Q
    |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| | | ||||||||| | |||||| |||| | ||||||||    
T  31351661 atcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctg 31351754  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 38415494 - 38415533
Alignment:
Q  158 tagtggctagattcaaacacattatgtatggagaaatgga 197  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatgga 38415533  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 35010382 - 35010439
Alignment:
Q  158 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 215  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| | | |||||||||    
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaacc 35010439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 1028836 - 1028751
Alignment:
Q  148 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataat 232  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| || | ||| | | |||||||||||| ||||| ||||||||    
T  1028836 tcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataat 1028751  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 28300194 - 28300139
Alignment:
Q  160 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 215  Q
    ||||||||||||| ||||||||||||||||||| |||  ||| | |||||||||||    
T  28300194 gtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaacc 28300139  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 19756417 - 19756461
Alignment:
Q  148 tcaggtaatctagtggctagattcaaacacattatgtatggagaa 192  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||    
T  19756417 tcaggtagcctagtggctagattcacacacattatgtgtggagaa 19756461  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 2098864 - 2098777
Alignment:
Q  148 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatc 235  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| | ||||||| |   | |||||||||||||||||    
T  2098864 tcagataatctagtggctagattcacacacattatatgtggagaagtggagaatccggggttcggattccgcccctacacataatatc 2098777  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 37307769 - 37307687
Alignment:
Q  157 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctct 238  Q
    |||||||||||||||||||||||||| | ||||||| |||  ||| | | ||||||||| | ||||| |||||||||||||||    
T  37307769 ctagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctct 37307687  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 9667228 - 9667312
Alignment:
Q  156 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 239  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  9667228 tctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 9667312  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 27227261 - 27227297
Alignment:
Q  156 tctagtggctagattcaaacacattatgtatggagaa 192  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27227261 tctagtggctagattcaaacacattatgtgtggagaa 27227297  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 23982130 - 23982068
Alignment:
Q  152 gtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 214  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| ||| | | ||||||||    
T  23982130 gtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaac 23982068  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 24250144 - 24250201
Alignment:
Q  157 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 214  Q
    |||||| ||||||||| ||||||||||| |||| || |||| ||| ||||||||||||    
T  24250144 ctagtgactagattcacacacattatgtgtggaaaagtggagaatccagggttcgaac 24250201  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 47684484 - 47684520
Alignment:
Q  156 tctagtggctagattcaaacacattatgtatggagaa 192  Q
    |||| |||||||||||| |||||||||||||||||||    
T  47684484 tctattggctagattcacacacattatgtatggagaa 47684520  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 9737574 - 9737657
Alignment:
Q  157 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaa-cctcacccctacacataatatctctg 239  Q
    ||||||| || ||||| ||||||||||| | ||||||| |||||| |  |||||||| ||| |||||| |||||||||||||||    
T  9737574 ctagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctg 9737657  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 52910376 - 52910421
Alignment:
Q  147 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 192  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  52910376 atcaggtagtctagtgactagattcacacacattatgtgtggagaa 52910421  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 11988928 - 11988964
Alignment:
Q  156 tctagtggctagattcaaacacattatgtatggagaa 192  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  11988928 tctagtggctagattcacacacattatgtgtggagaa 11988964  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 37123676 - 37123631
Alignment:
Q  147 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 192  Q
    |||| ||| ||||||||||||||||| ||||||||||| |||||||    
T  37123676 atcaagtagtctagtggctagattcacacacattatgtgtggagaa 37123631  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 8915675 - 8915639
Alignment:
Q  156 tctagtggctagattcaaacacattatgtatggagaa 192  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  8915675 tctagtggctagattcacacacattatttatggagaa 8915639  T

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