View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0385_low_3 (Length: 349)
Name: NF0385_low_3
Description: NF0385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0385_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 73 - 341
Target Start/End: Original strand, 28442926 - 28443194
Alignment:
| Q |
73 |
ataatgtcccgatggaattggttccattaagtggttctggtaagtgtaacagcacgggttgtcctacggatttgaatgcggtgtgtccaacagagttgaa |
172 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28442926 |
ataatgtcccgatggaattggttccattaggtggttctggtaagtgtaacagcacgggttgtcctacggatttgaatgcggtgtgtccaacagagttgaa |
28443025 |
T |
|
| Q |
173 |
agtaacacaaaatgggacggttgtggcgtgtcagggtccttgtgctgcttttaatttgcagtttttctgttgcgctgggaatcattcaactccaagtagt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
28443026 |
agtaacacaaaatgggacggttgtggcgtgtcagggtccttgtgctgcttttaatttgcagtttttctgttgtgctgggaatcattcaactccaagtact |
28443125 |
T |
|
| Q |
273 |
tgtgagccgagtgtgtatgctcagatattcaagacgacgtgccctcaagcttatagctatacctatgat |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28443126 |
tgtgagccgagtgtgtatgctcagatattcaagacgacgtgccctcaagcttatagctatacctatgat |
28443194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 94 - 332
Target Start/End: Original strand, 28483959 - 28484197
Alignment:
| Q |
94 |
ttccattaagtggttctggtaagtgtaacagcacgggttgtcctacggatttgaatgcggtgtgtccaacagagttgaaagtaacacaaaatgggacggt |
193 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| || |
|
|
| T |
28483959 |
ttccgttaggtggttctggaaagtgtaacagcacgggttgtcctaccgatttgaatgcggtgtgtccaacagagttgaaagtaacgaacaatgggacagt |
28484058 |
T |
|
| Q |
194 |
tgtggcgtgtcagggtccttgtgctgcttttaatttgcagtttttctgttgcgctgggaatcattcaactccaagtagttgtgagccgagtgtgtatgct |
293 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
28484059 |
tgtggcgtgtcatggtccttgtgctgcttttaatttgcagtttttctgttgtgttgggaatcattcaactccaaatacttgtgagccgagtgtgtatgct |
28484158 |
T |
|
| Q |
294 |
cagatattcaagacgacgtgccctcaagcttatagctat |
332 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
28484159 |
cagatattcaagacgacttgccctcaagcctatagctat |
28484197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 586 times since January 2019
Visitors: 3061