View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0387_high_1 (Length: 265)
Name: NF0387_high_1
Description: NF0387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0387_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19421649 - 19421415
Alignment:
| Q |
1 |
ttaaatgcatatttgaaatgtgttaaccatctaagttgttggcgaattttgatgtcaaatttatgtgcccaaataacacagcacttattatagtagtaca |
100 |
Q |
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| T |
19421649 |
ttaaatgcatatttgaaatgtgttagccatctaagttgttggcgaattttgatgtcaaatttatgtgcccaaataacacagcacttattatagtagtaca |
19421550 |
T |
|
| Q |
101 |
tggcacaacaagcaatttgcagaagtttttgctaggggtttgataatatgactgatagggagatcaaaagttatgttgaatctgaaacatttatgtatca |
200 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19421549 |
tggcacaacaagcaatttacagaagtttttactaggggtttgataatatgactgatagggagatcaaaagttctgttgaatctgaaacatttatgtatca |
19421450 |
T |
|
| Q |
201 |
ccaatgaagtttgtgtgcattgacatacctagcat |
235 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
19421449 |
acaatgaagtttgcgtgcattgacatacctagcat |
19421415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 22235547 - 22235600
Alignment:
| Q |
8 |
catatttgaaatgtgttaaccatctaagttgttggcgaattttgatgtcaaattt |
62 |
Q |
| |
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| T |
22235547 |
catatttgaaa-gtgttaaccatctaagttgttgtcgaattttgatgtcaaattt |
22235600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 19428470 - 19428401
Alignment:
| Q |
166 |
aaaagttatgttgaatctgaaacatttatgtatcaccaatgaagtttgtgtgcattgacatacctagcat |
235 |
Q |
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| T |
19428470 |
aaaagttatgtagaatctgaaacatttaagtaacaccgatgaagtttatgtgcatttccatacctagcat |
19428401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 42960705 - 42960776
Alignment:
| Q |
7 |
gcatatttgaaatgtgttaaccatctaagttgttggcgaattttgatgtcaaatttatgtgcccaaataaca |
78 |
Q |
| |
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||||||||||| | |||||||||||||| |||||| |||| ||| ||| ||||||| |||| | |||||||| |
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| T |
42960705 |
gcatatttgaactatgttaaccatctaatttgttgtcgaaatttaatgacaaatttgtgtgtcaaaataaca |
42960776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 11792056 - 11792003
Alignment:
| Q |
8 |
catatttgaaatgtgttaaccatctaagttgttggcgaattttgatgtcaaatt |
61 |
Q |
| |
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||||| |||| |||||||||| ||||| |||||| |||| |||||||||||||| |
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|
| T |
11792056 |
catatgtgaattgtgttaaccgtctaatttgttgtcgaaatttgatgtcaaatt |
11792003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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