View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0387_low_1 (Length: 446)

Name: NF0387_low_1
Description: NF0387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0387_low_1
NF0387_low_1
[»] chr2 (4 HSPs)
chr2 (54-309)||(38944086-38944341)
chr2 (342-436)||(38943959-38944053)
chr2 (70-211)||(28127043-28127184)
chr2 (350-394)||(38993391-38993435)
[»] chr6 (2 HSPs)
chr6 (54-308)||(18328589-18328843)
chr6 (342-395)||(18328501-18328554)
[»] chr8 (8 HSPs)
chr8 (59-309)||(21545015-21545261)
chr8 (342-394)||(21544930-21544982)
chr8 (343-395)||(7499286-7499338)
chr8 (342-383)||(21544229-21544270)
chr8 (342-383)||(21544488-21544529)
chr8 (361-395)||(32721325-32721359)
chr8 (361-394)||(38684867-38684900)
chr8 (362-395)||(43418199-43418232)
[»] chr4 (2 HSPs)
chr4 (54-249)||(9453464-9453660)
chr4 (247-309)||(9453769-9453831)
[»] scaffold0790 (1 HSPs)
scaffold0790 (361-395)||(3968-4002)
[»] scaffold0188 (1 HSPs)
scaffold0188 (356-394)||(28312-28350)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 38944341 - 38944086
Alignment:
Q  54 atcatagggagtagtaagtagttatttcatggatgtgaatttctacacggatagatttgttcgctaatcaaaatgcgaacacagtttatatgcagtatgc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38944341 atcatagggagtagtaagtagttatttcatggatgtgaatttctacacggatagatttgttcgctaatcaaaatgcgaacacagtttatatgcagtatgc 38944242  T
Q  154 taagtttgaaaattttggtgccatttctatgtaggtttttcaaaacatgataccatatatgatttattttttctcacctatgtaatcatttttaaatagt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38944241 taagtttgaaaattttggtgccatttctatgtaggtttttcaaaacatgataccatatatgatttattttttctcacctatgtaatcatttttaaatagt 38944142  T
Q  254 tccgacaagtaattcatgagacacctcaatctcattggaaccgtaatgtagatatc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38944141 tccgacaagtaattcatgagacacctcaatctcattggaaccgtaatgtagatatc 38944086  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 342 - 436
Target Start/End: Complemental strand, 38944053 - 38943959
Alignment:
Q  342 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagtttattataaaatatgaaatttccaatttcctctctccatatg 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38944053 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagtttattataaaatatgaaatttccaatttcctctctccatatg 38943959  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 28127043 - 28127184
Alignment:
Q  70 agtagttatttcatggatgtgaatttctacacggatagatttgttcgctaatcaaaatgcgaacacagtttatatgcagtatgctaagtttgaaaatttt 169  Q
    |||||||||| ||||||||||| | |||||||||||||||||||| ||| ||||||||| ||| ||| ||| |||| ||| |||||||||||||| |||     
T  28127043 agtagttattccatggatgtgagtatctacacggatagatttgtttgcttatcaaaatgtgaaaacaatttttatgtagtgtgctaagtttgaaagttta 28127142  T
Q  170 ggtgccatttctatgtaggtttttcaaaacatgataccatat 211  Q
    ||||| ||||||| | || ||||||||||  |||||| ||||    
T  28127143 ggtgcaatttctaggcagatttttcaaaaattgatacaatat 28127184  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 38993435 - 38993391
Alignment:
Q  350 ttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagt 394  Q
    ||||||| ||||||||| |||||||||||||||| ||| ||||||    
T  38993435 ttcaactttaaaagacccgtgcggcgcacgggtcagcgttctagt 38993391  T

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Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 54 - 308
Target Start/End: Complemental strand, 18328843 - 18328589
Alignment:
Q  54 atcatagggagtagtaagtagttatttcatggatgtgaatttctacacggatagatttgttcgctaatcaaaatgcgaacacagtttatatgcagtatgc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  ||||||    
T  18328843 atcatagggagtagtaagtagttatttcatggatgtgaatttctacacggatagatttgttcgctaatcaaaatgcgaacacattttaaatgttgtatgc 18328744  T
Q  154 taagtttgaaaattttggtgccatttctatgtaggtttttcaaaacatgataccatatatgatttattttttctcacctatgtaatcatttttaaatagt 253  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18328743 taagtttgaaaattttggtgtcatttcaatgtaggtttttcaaaacatgatatcatatatgatttattttttctcacctatgtaatcatttttaaatagt 18328644  T
Q  254 tccgacaagtaattcatgagacacctcaatctcattggaaccgtaatgtagatat 308  Q
    ||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||    
T  18328643 tcctacaatttattcatgagacacctcaatctcattggaaccgtaaagtagatat 18328589  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 18328554 - 18328501
Alignment:
Q  342 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagtt 395  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  18328554 ttttcatcttcaactctaaaagactcgtgcggcgcacgggtcggcgatctagtt 18328501  T

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Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 59 - 309
Target Start/End: Complemental strand, 21545261 - 21545015
Alignment:
Q  59 agggagtagtaagtagttatttcatggatgtgaatttctacacggatagatttgttcgctaatcaaaatgcgaacacagtttatatgcagtatgctaagt 158  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||  ||||||| ||||    
T  21545261 agggagtagtaagtagttattcaatagatgtgaatttctacacggatagatttgttcgcttatcaaaatgcgaacgcggtttatatttagtatgccaagt 21545162  T
Q  159 ttgaaaattttggtgccatttctatgtaggtttttcaaaacatgataccatatatgatttattttttctcacctatgtaatcatttttaaatagttccga 258  Q
    |  ||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||  |  ||||||||||  ||||||||||| ||| |    
T  21545161 tcaaaagttttggtggcatttttatgtaggtttttcaaaacatgataccatatataatttatttttcgtagcctatgtaattgtttttaaatagctccta 21545062  T
Q  259 caagtaattcatgagacacctcaatctcattggaaccgtaatgtagatatc 309  Q
        |||||||| | ||||||||||||||||| || | |||| ||||||||    
T  21545061 ----taattcattacacacctcaatctcattgaaaacataatatagatatc 21545015  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 21544982 - 21544930
Alignment:
Q  342 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagt 394  Q
    |||||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  21544982 ttttcatcttcaactctataagacccgtgcggcgcacgggtcggtgatctagt 21544930  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 7499286 - 7499338
Alignment:
Q  343 tttcatcttcaactctaaaagacctgtgcggcgcacgggtcggcgatctagtt 395  Q
    |||||||||||||||||||||| | |||||| ||||||||||||||| |||||    
T  7499286 tttcatcttcaactctaaaagatccgtgcggtgcacgggtcggcgatttagtt 7499338  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 21544229 - 21544270
Alignment:
Q  342 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtc 383  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  21544229 ttttcatcttcaactctataagacccgtgcggcgcacgggtc 21544270  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 21544488 - 21544529
Alignment:
Q  342 ttttcatcttcaactctaaaagacctgtgcggcgcacgggtc 383  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  21544488 ttttcatcttcaactctataagacccgtgcggcgcacgggtc 21544529  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 32721325 - 32721359
Alignment:
Q  361 aagacctgtgcggcgcacgggtcggcgatctagtt 395  Q
    ||||||||||||||||||||||||||| |||||||    
T  32721325 aagacctgtgcggcgcacgggtcggcgttctagtt 32721359  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 394
Target Start/End: Original strand, 38684867 - 38684900
Alignment:
Q  361 aagacctgtgcggcgcacgggtcggcgatctagt 394  Q
    |||||| |||||||||||||||||||||||||||    
T  38684867 aagacccgtgcggcgcacgggtcggcgatctagt 38684900  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 395
Target Start/End: Complemental strand, 43418232 - 43418199
Alignment:
Q  362 agacctgtgcggcgcacgggtcggcgatctagtt 395  Q
    |||||||||||||||||||||||||| |||||||    
T  43418232 agacctgtgcggcgcacgggtcggcgttctagtt 43418199  T

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Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 54 - 249
Target Start/End: Original strand, 9453464 - 9453660
Alignment:
Q  54 atcatagggagtagtaagtagttatttcatggatgtgaatttctacacggatagatttgttcgctaatcaaaatgcgaacacagtttatatgcagtatgc 153  Q
    |||||||||| |||||| |||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||  |||| |    
T  9453464 atcatagggaatagtaaatagttattccatagatgtgaatttctacactgatagatttgttcgcttatcaaaatgcaaacacagtttatatgttgtatac 9453563  T
Q  154 taagtttgaaa-attttggtgccatttctatgtaggtttttcaaaacatgataccatatatgatttattttttctcacctatgtaatcatttttaaa 249  Q
     |||||  |||  |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||  |  | ||||||||||||||||||    
T  9453564 caagttcaaaagtttttggtgccatttttatgtaggtttttcaaaacaggataccatatatgatttatttttcgttgcttatgtaatcatttttaaa 9453660  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 9453769 - 9453831
Alignment:
Q  247 aaatagttccgacaagtaattcatgagacacctcaatctcattggaaccgtaatgtagatatc 309  Q
    |||||| ||| | ||||||||||| ||||||||||||||||||| || | |||| ||||||||    
T  9453769 aaatagctcctataagtaattcattagacacctcaatctcattgaaaacataatttagatatc 9453831  T

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Target: scaffold0790 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 3968 - 4002
Alignment:
Q  361 aagacctgtgcggcgcacgggtcggcgatctagtt 395  Q
    |||||| ||||||||||||||||||||||||||||    
T  3968 aagacccgtgcggcgcacgggtcggcgatctagtt 4002  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 28350 - 28312
Alignment:
Q  356 tctaaaagacctgtgcggcgcacgggtcggcgatctagt 394  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  28350 tctaaaagacccgtgcggcgcacgggtcggcgttctagt 28312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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