View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0387_low_4 (Length: 276)
Name: NF0387_low_4
Description: NF0387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0387_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 45546545 - 45546358
Alignment:
| Q |
2 |
agtgacattgacacatggaccagaagagcccactgagcctgagcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagtt |
101 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45546545 |
agtgacactgacacatggaccagaagagcccactaattctgagcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagtt |
45546446 |
T |
|
| Q |
102 |
agggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggacatgacactgaaactcagcatattcctgatgatgatg |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45546445 |
agggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggacatgacactgaaactcagcatattcctgatgatgatg |
45546358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 45551732 - 45551601
Alignment:
| Q |
54 |
gagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggac |
153 |
Q |
| |
|
|||||||| |||||| ||| || ||||||||||||||||| |||| ||| ||||| ||||| || || ||||| | ||| |||||||||||| ||||| |
|
|
| T |
45551732 |
gagaagaaatctgttctgaataaggtgaaggcaaaggctaagaaaattaaggacacaattaaaaaacacggtcaacaagtacttgatcatggtaatggac |
45551633 |
T |
|
| Q |
154 |
atgacactgaaactcagcatattcctgatgat |
185 |
Q |
| |
|
|| ||| ||||| |||||||| || ||||||| |
|
|
| T |
45551632 |
ataacaatgaaattcagcatactcatgatgat |
45551601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 732 times since January 2019
Visitors: 3064