View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0390_high_6 (Length: 279)
Name: NF0390_high_6
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0390_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 40843599 - 40843796
Alignment:
| Q |
53 |
acacttttaatttgaagtttctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaaggaaagccaaaggtccat |
152 |
Q |
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| T |
40843599 |
acacttttaatttgaagtgtctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaaggaaagccaaaggtccat |
40843698 |
T |
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| Q |
153 |
ggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccacttcatggcatcaacc |
250 |
Q |
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| T |
40843699 |
ggcttttcagaattcctgcttcttcactatccaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccacttcatggcatcaacc |
40843796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 38 - 248
Target Start/End: Original strand, 40838967 - 40839176
Alignment:
| Q |
38 |
tatgtcgaaaaccagaca--cttttaatttgaagtttctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaag |
135 |
Q |
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| T |
40838967 |
tatgtcgaacaccagacaaacttttaatttgaagtgtctgtacattgtagacgaatagccgcttatgctcatgaatacatccttaaact---accttgcg |
40839063 |
T |
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| Q |
136 |
gaaagccaaaggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccac |
235 |
Q |
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| T |
40839064 |
gaaagccaatggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaacggagttgtaggagactccttatatgctgtctgacctgaccac |
40839163 |
T |
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| Q |
236 |
ttcatggcatcaa |
248 |
Q |
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| T |
40839164 |
ttcatggcatcaa |
40839176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 40849594 - 40849732
Alignment:
| Q |
108 |
gaatacatccttaaacacaaaccttaaggaaagccaaaggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggaga |
207 |
Q |
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|||||||||||| |||||||||||| |||||||| | |||||| |||||||||||| ||||||||||||||||||||||||| ||| || |||||||| |
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| T |
40849594 |
gaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggaga |
40849693 |
T |
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| Q |
208 |
ctccttaaatgttgtctgacctgaccacttcatggcatc |
246 |
Q |
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| T |
40849694 |
caccttaaattctttttgacctgaccacgtcatggcatc |
40849732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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