View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0390_low_1 (Length: 697)
Name: NF0390_low_1
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0390_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 29 - 569
Target Start/End: Complemental strand, 36675779 - 36675230
Alignment:
| Q |
29 |
attaagtactaaccataatagacaaaggtgaagcatacatgccaatattaaatagcatgcatatggtcccaacaacagcagaacgtttgttaacagtgtg |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675779 |
attaagtactaaccataatagacaaaggtgaagcatacatgccaatattaaatagcatgcatatggtcccaacaacagcagaacgtttgttaacagtgtg |
36675680 |
T |
|
| Q |
129 |
aagcatagtcaatgaaacaaatgagagaaggaaaatgaaaataagctccaatagtaaaccaagaaagactttgagcctctttttacggtcagaatatatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675679 |
aagcatagtcaatgaaacaaatgagagaaggaaaatgaaaataagctccaatagtaaaccaagaaagactttgagcctctttttacggtcagaatatatg |
36675580 |
T |
|
| Q |
229 |
agaaagagtgtgatatagatgatctcaaccacacatcctgctccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagag |
328 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675579 |
agaaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagag |
36675480 |
T |
|
| Q |
329 |
tccaaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataa |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675479 |
tccaaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataa |
36675380 |
T |
|
| Q |
429 |
ttaaggacatgaaggaaaaaattaacaacaaat---------gttaatttttacgttaaaattgaaaaatgcgggaagagatttaaaaataatcttacac |
519 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36675379 |
ttaaggacatgaaggaaaaaattaacaacaaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacac |
36675280 |
T |
|
| Q |
520 |
tggagacaagaacatgcagccggctatgacatttcctgaagtcaagaagg |
569 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36675279 |
tggagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagg |
36675230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 29 - 569
Target Start/End: Complemental strand, 36685861 - 36685312
Alignment:
| Q |
29 |
attaagtactaaccataatagacaaaggtgaagcatacatgccaatattaaatagcatgcatatggtcccaacaacagcagaacgtttgttaacagtgtg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36685861 |
attaagtactaaccataatagacaaaggtgaagcatacatgccaatattaaatagcatgcatatggtcccaacaacagcagaacgtttgttaacagtgtg |
36685762 |
T |
|
| Q |
129 |
aagcatagtcaatgaaacaaatgagagaaggaaaatgaaaataagctccaatagtaaaccaagaaagactttgagcctctttttacggtcagaatatatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685761 |
aagcatagtcaatgaaacaaatgagagaaggaaaatgaaaataagctccaatagtaaaccaagaaagactttgagcctctttttacggtcagaatatatg |
36685662 |
T |
|
| Q |
229 |
agaaagagtgtgatatagatgatctcaaccacacatcctgctccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagag |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685661 |
agaaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagag |
36685562 |
T |
|
| Q |
329 |
tccaaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataa |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36685561 |
tccaaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataa |
36685462 |
T |
|
| Q |
429 |
ttaaggacatgaaggaaaaaattaacaacaaat---------gttaatttttacgttaaaattgaaaaatgcgggaagagatttaaaaataatcttacac |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
36685461 |
ttaaggacatgaaggaaaaaattaacaacaaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacac |
36685362 |
T |
|
| Q |
520 |
tggagacaagaacatgcagccggctatgacatttcctgaagtcaagaagg |
569 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
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| T |
36685361 |
tggagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagg |
36685312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 638 - 691
Target Start/End: Complemental strand, 36675166 - 36675113
Alignment:
| Q |
638 |
atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatgatac |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36675166 |
atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatgatac |
36675113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 232 - 423
Target Start/End: Original strand, 42224268 - 42224459
Alignment:
| Q |
232 |
aagagtgtgatatagatgatctcaaccacacatcctgctccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtcc |
331 |
Q |
| |
|
||||| |||| ||| |||||||||| |||||| |||| || |||||||| ||||| || | |||| ||||||||||| |||| ||||| || |||| |
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| T |
42224268 |
aagagcgtgacatatatgatctcaatcacacaacctgagccgttgatggttaccacgagcacgctgtccgggtgcaccataggcagaccgtatagtgtcc |
42224367 |
T |
|
| Q |
332 |
aaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctg |
423 |
Q |
| |
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| ||||||||||| | | || |||||||||||| | |||||| |||| ||||| ||||||||||| |||||| ||| ||| ||||||||| |
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| T |
42224368 |
ataccatgcagttaacaagtgttgctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctg |
42224459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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