View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0390_low_10 (Length: 265)
Name: NF0390_low_10
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0390_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 51763665 - 51763441
Alignment:
| Q |
29 |
agcaccttcgcttcccaacctccaaccatgaccgccaccacgtcatcctaagcgctaggtactccgcacagaagttctgtgtatctgattcctcaatctc |
128 |
Q |
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| T |
51763665 |
agcaccttcgcttcccaacttccaaccatgaccgccaccacgtcatcctaagcgctaggtactccgcacggaagttctgtatatctgattcctcaatctc |
51763566 |
T |
|
| Q |
129 |
ctctattttcagttccgccgcatcctttcctagttttaagcagctcattcaccctctcattcttaatcttacggataatatggatcctatggcaggagag |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51763565 |
ctctattttcagttccgccgcatcctttcctagttttaagcagctcattcaccctctcattcttaatcttacggata--atggatcctatggcaggagag |
51763468 |
T |
|
| Q |
229 |
tttcagcttgtgacggaatgctctgtg |
255 |
Q |
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||||||||||||||||||||||||||| |
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| T |
51763467 |
tttcagcttgtgacggaatgctctgtg |
51763441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 51857923 - 51857975
Alignment:
| Q |
29 |
agcaccttcgcttcccaacctccaaccatgaccgccaccacgtcatcctaagc |
81 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||| || |||||||| |
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| T |
51857923 |
agcaccttcgcttgtcaacctccaacctcgaccgccaccacctcttcctaagc |
51857975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 4183656 - 4183620
Alignment:
| Q |
120 |
ctcaatctcctctattttcagttccgccgcatccttt |
156 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
4183656 |
ctcaatctcctctattttcagttccgctgcatccttt |
4183620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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