View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0390_low_12 (Length: 251)

Name: NF0390_low_12
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0390_low_12
NF0390_low_12
[»] chr6 (12 HSPs)
chr6 (1-222)||(31045820-31046039)
chr6 (19-89)||(31035521-31035591)
chr6 (3-89)||(31056774-31056860)
chr6 (143-217)||(31069850-31069924)
chr6 (1-89)||(31080647-31080735)
chr6 (1-80)||(31027119-31027198)
chr6 (151-207)||(31035373-31035429)
chr6 (20-81)||(31110543-31110604)
chr6 (1-81)||(31070013-31070093)
chr6 (164-215)||(31080494-31080545)
chr6 (143-196)||(31110404-31110457)
chr6 (1-89)||(31096276-31096364)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-219)||(170691-170904)
[»] scaffold0202 (1 HSPs)
scaffold0202 (1-89)||(4966-5054)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31046039 - 31045820
Alignment:
Q  1 ccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgttatacctgaata 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||  |||| |    
T  31046039 ccaactatgagataatgggtgatatacactcttattttatagggaaatcttcatgcctgttttaacacatactcgatgtgggacttgttata--tgaaga 31045942  T
Q  101 gagaaacgaaagtctcatgtgaaggttacaagagaaaagcttcaatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggttta 200  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31045941 gaaaaacgaaagtttcatgtgaaggttacaagagaaaagcttcaatatataaaggaaatactaatccaattccaaatccaacaagttgcaggaaggttta 31045842  T
Q  201 tctctctcacacacatttagtt 222  Q
    |||||||| |||||||||||||    
T  31045841 tctctctctcacacatttagtt 31045820  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 31035591 - 31035521
Alignment:
Q  19 gtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgtt 89  Q
    |||||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  31035591 gtgatatacactcttcttttataggaaaaccttcatgactgttttaacacatactcgatgtggaacttgtt 31035521  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 31056860 - 31056774
Alignment:
Q  3 aactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgtt 89  Q
    ||||||||| ||||   ||||||| | |||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||||    
T  31056860 aactatgagttaatatttgatatacaatcttattttatatgtaaaccttcctgcctgttttaacacatactcgatgtgggacttgtt 31056774  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 31069924 - 31069850
Alignment:
Q  143 caatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacacatt 217  Q
    |||||| | ||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||    
T  31069924 caatatctgaagcaaatactaatccaattccaaatccaacaagtttcaggaaggtctatctctcacacacacatt 31069850  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31080735 - 31080647
Alignment:
Q  1 ccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgtt 89  Q
    ||||||||||| | ||  || ||||| |||||||||||||||| |||||||| ||| ||||||||||||||||| |||||| |||||||    
T  31080735 ccaactatgagttgataagttatatacactcttattttataggtaaaccttcgtgcatgttttaacacatactctatgtgggacttgtt 31080647  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 31027198 - 31027119
Alignment:
Q  1 ccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtg 80  Q
    ||||||||||   ||| ||||||||| |||||||||||||||| ||||||   |||||||||||||||||||||||||||    
T  31027198 ccaactatgactaaattggtgatatacactcttattttataggtaaacctctgtgcctgttttaacacatactcgatgtg 31027119  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 31035429 - 31035373
Alignment:
Q  151 aaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctct 207  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||    
T  31035429 aaaggaaatactaattcaattccaaatccaacaagtttcaggaaggtctatctctct 31035373  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 31110604 - 31110543
Alignment:
Q  20 tgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtgg 81  Q
    ||||||| || ||||||||||||| |||| ||||| | ||||||||||||||||||||||||    
T  31110604 tgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgatgtgg 31110543  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 31070093 - 31070013
Alignment:
Q  1 ccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtgg 81  Q
    ||||||||||  |||| ||||||||| |||||||||||||||| ||| |||  || ||||||| |||||| ||||||||||    
T  31070093 ccaactatgacttaattggtgatatacactcttattttataggtaaatctttctgactgttttgacacatcctcgatgtgg 31070013  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 31080545 - 31080494
Alignment:
Q  164 atccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacaca 215  Q
    ||||||||||||||| |||||| || | ||||||||||||||||||||||||    
T  31080545 atccaattccaaatccaacaagctgtacgaaggtttatctctctcacacaca 31080494  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 31110457 - 31110404
Alignment:
Q  143 caatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaagg 196  Q
    |||||| |||||||||||||||| |||||||||||| ||||||  |||||||||    
T  31110457 caatatctaaaggaaatactaattcaattccaaatccaacaagcagcaggaagg 31110404  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31096276 - 31096364
Alignment:
Q  1 ccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgtt 89  Q
    ||||||||| | ||||  ||||| || |||||||||||||| | ||| |||  ||||| |||||||  ||||||||||||| |||||||    
T  31096276 ccaactatgtgttaataagtgatgtacactcttattttataagtaaaacttagtgcctattttaacgtatactcgatgtgggacttgtt 31096364  T

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Target: scaffold0018 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 170691 - 170904
Alignment:
Q  1 ccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttg---ttatacctga 97  Q
    ||||||||| | ||||  |||||| | |||||||||||||||| |||||||| |   |||||||||| ||||||||||||| |||||   |||| || ||    
T  170691 ccaactatgggttaataagtgatacacactcttattttataggtaaaccttcttctatgttttaacatatactcgatgtgggacttgttattatgcccga 170790  T
Q  98 atagagaaacgaaagtctcatgtgaaggttacaagagaa----aagcttcaatatataaaggaaatactaatccaattccaaatcaaacaagttgcagga 193  Q
    | ||| |||| ||||||||||||||||||||||||||||    |||||||||||| ||||||            ||||||||||| |||||| ||||| |    
T  170791 agagaaaaaccaaagtctcatgtgaaggttacaagagaagaagaagcttcaatatctaaagg------------aattccaaatccaacaagctgcagaa 170878  T
Q  194 aggtttatctctctcacacacattta 219  Q
    ||||||||||||||| |||| |||||    
T  170879 aggtttatctctctcgcacatattta 170904  T

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Target: scaffold0202 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 4966 - 5054
Alignment:
Q  1 ccaactatgagataatgggtgatatatactcttattttatagggaaaccttcatgcctgttttaacacatactcgatgtggaacttgtt 89  Q
    ||||||||||| ||||  |||||||| |||||||||||||||  ||||||   |||||||||||||  |||||| |||||| |||||||    
T  4966 ccaactatgagttaataagtgatatacactcttattttatagataaacctcagtgcctgttttaacgtatactctatgtgggacttgtt 5054  T

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