View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0390_low_13 (Length: 220)

Name: NF0390_low_13
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0390_low_13
NF0390_low_13
[»] chr6 (7 HSPs)
chr6 (22-207)||(27605136-27605321)
chr6 (107-209)||(27586215-27586314)
chr6 (101-163)||(27338528-27338586)
chr6 (101-163)||(27399268-27399326)
chr6 (102-186)||(27531644-27531724)
chr6 (142-183)||(26655627-26655669)
chr6 (142-183)||(26761598-26761640)
[»] scaffold1254 (1 HSPs)
scaffold1254 (101-162)||(380-437)
[»] scaffold0419 (1 HSPs)
scaffold0419 (101-162)||(7192-7249)
[»] chr4 (1 HSPs)
chr4 (101-164)||(18724519-18724578)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 27605136 - 27605321
Alignment:
Q  22 atttggagtctttaatataacaaggagaaattgttcttaagaaatagttatttttgtcataagtttttgcggtctgtgttgacaaaaatggtttgtgaaa 121  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27605136 atttggagtctttaatataacaaggagaaattgttcttaataaatagttattttggtcataagtttttgcggtctgtgttgacaaaaatggtttgtgaaa 27605235  T
Q  122 cttcctggtcacttcctatctatagccgtgtggaccaatcacatactaaatatcactgtactacacttcttcttgctatattcttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27605236 cttcctggtcacttcctatctatagccgtgtggaccaatcacatactaaatatcactgtactacacttcttcttgctaaattcttc 27605321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 27586215 - 27586314
Alignment:
Q  107 aaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcacatactaaatatcactgtacta-cacttcttcttgctatattct 205  Q
    ||||||| ||||||||||||||| |||||    |  |||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||  ||||    
T  27586215 aaatggtatgtgaaacttcctggccactt----tgaatagccgtgtggaccaatcacatactaaatataactgtactaccgcctcttcttgctaatttct 27586310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 27338528 - 27338586
Alignment:
Q  101 tgacaaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcac 163  Q
    ||||||||||| ||||||||||||| ||| ||||||    |||||||||||||||||||||||    
T  27338528 tgacaaaaatgatttgtgaaacttcttggccacttc----ctatagccgtgtggaccaatcac 27338586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 27399268 - 27399326
Alignment:
Q  101 tgacaaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcac 163  Q
    ||||||||||| ||||||||||||| ||| ||||||    |||||||||||||||||||||||    
T  27399268 tgacaaaaatgatttgtgaaacttcttggccacttc----ctatagccgtgtggaccaatcac 27399326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 27531644 - 27531724
Alignment:
Q  102 gacaaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcacatactaaatatcactgtactaca 186  Q
    |||||||||| | |||||||||||||||  |||||||||    |||||||||||||||||| | | |||||| || |||||||||    
T  27531644 gacaaaaatgatatgtgaaacttcctggcaacttcctat----agccgtgtggaccaatcatacattaaataacattgtactaca 27531724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 26655669 - 26655627
Alignment:
Q  142 tatagccgtgtggacc-aatcacatactaaatatcactgtact 183  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  26655669 tatagccgtgtggacccaatcacatactaaatatcattgtact 26655627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 26761640 - 26761598
Alignment:
Q  142 tatagccgtgtggacc-aatcacatactaaatatcactgtact 183  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  26761640 tatagccgtgtggacccaatcacatactaaatatcattgtact 26761598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 380 - 437
Alignment:
Q  101 tgacaaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatca 162  Q
    ||||||||||||| ||||||||||| ||| ||||||    ||||||||||||||||||||||    
T  380 tgacaaaaatggtctgtgaaacttcttggccacttc----ctatagccgtgtggaccaatca 437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 7249 - 7192
Alignment:
Q  101 tgacaaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatca 162  Q
    ||||||||||||| ||||||||||| ||| ||||||    ||||||||||||||||||||||    
T  7249 tgacaaaaatggtctgtgaaacttcttggccacttc----ctatagccgtgtggaccaatca 7192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 18724519 - 18724578
Alignment:
Q  101 tgacaaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcaca 164  Q
    ||||||||||||| ||| ||||||||||  ||||||    ||||||||||||||||||||||||    
T  18724519 tgacaaaaatggtctgttaaacttcctgaccacttc----ctatagccgtgtggaccaatcaca 18724578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1643 times since January 2019
Visitors: 3091