View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0390_low_14 (Length: 220)
Name: NF0390_low_14
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0390_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 42010803 - 42010993
Alignment:
| Q |
1 |
acaatcataaaataattcagttggaggataagaatttcagtttggattaagtattaggaaaacaaaccaacaatgtcacggttgaaagtgttaccttttt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42010803 |
acaatcataaagtaattcagttggaggataagaatttcagtttggattaagtattaggaaaacaaaccaacaatgtcacggttgaaagtgttaccttttt |
42010902 |
T |
|
| Q |
101 |
tgctacaaggacaacttcagtggctaactaactataagaggtgtatagatgttatttgagtatcatgatgatctttggttcgaaagaaaag |
191 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42010903 |
tgctacaaggacaacttcagtcgccaactaactataagaggtgtatagatgttatttgagtatcatgatgatatttggttcgaaagaaaag |
42010993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1580 times since January 2019
Visitors: 3090