View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0390_low_2 (Length: 617)
Name: NF0390_low_2
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0390_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 22 - 589
Target Start/End: Complemental strand, 35027339 - 35026769
Alignment:
| Q |
22 |
atcatcactcaaaaaagaaatagaatcagagaaatattaggtatcatcaatgtcaaacataattaaataatatatttttatatgtgtttaaatgattgta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35027339 |
atcatcactcaaaaaagaaatagaatcagagaaatattaggtatcatcaatgtcaaacataattaaataatatatttttatacgtgtttaaatgattgta |
35027240 |
T |
|
| Q |
122 |
accatctaaataatattctctagaaaaacatgtgattctcattctttagaatcgcagttttcattagacatgc------ataacaatataattccataat |
215 |
Q |
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| T |
35027239 |
accatctaaaaaatattctctagaaaaacatgtgattctcattctttagaatcgcagttttcattagacatgctcatgcataacaatataattccataat |
35027140 |
T |
|
| Q |
216 |
caatcttattttcaaatagtgtaaattaatttgaaccgacagtttttnnnnnnntttaaattcagcaactaaccttaatcattacttatcagtactttat |
315 |
Q |
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| T |
35027139 |
caatcg-atctt-attttgtgtaaattaatttgaaccgacagtttttaaaaaaatttaaattcagcaactaaccttaatcatcacttatcagtactttat |
35027042 |
T |
|
| Q |
316 |
aatctttcttatttagcaaaggacaatttccaatttatttgtccttgtggcaaccaaggttttacaaaagcaggttgttaaagagaaaagagaatgggaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35027041 |
aatctttcttatttagcaaaggacaatttccaattgatttgtccctgtggcaaccaaggttttacaaaagcag-ttgttaaagagaaaagagaatgggaa |
35026943 |
T |
|
| Q |
416 |
tccttttattatacattaaatgataatataaataattttaataaagtttatgtaatggtgtgatataattcacaccgcgagaccaaaatccccacctcgg |
515 |
Q |
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| T |
35026942 |
tccttttattatacattaaatgataatataaataattttaataaagtttatgtaatggtgtgatataattcacaccgcgagaccaaaatccccacctcgg |
35026843 |
T |
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| Q |
516 |
acattaattttgacgataagcttgatctgacaaacgtggactaagaatgacttgtagaggagaagctttgatgt |
589 |
Q |
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| T |
35026842 |
acattaattttgacgataagcttgatctgacaaacgtggactaaggatgacttgtagaggagaagctttgatgt |
35026769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 459
Target Start/End: Complemental strand, 5199057 - 5199019
Alignment:
| Q |
421 |
ttattatacattaaatgataatataaataattttaataa |
459 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
5199057 |
ttattatacattatatgataatataaataattttaataa |
5199019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 586
Target Start/End: Complemental strand, 35048400 - 35048357
Alignment:
| Q |
543 |
tgacaaacgtggactaagaatgacttgtagaggagaagctttga |
586 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||| ||||||| |
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| T |
35048400 |
tgacaaacgtggagtaagaatgacttctagaggagatgctttga |
35048357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 459
Target Start/End: Original strand, 4848648 - 4848686
Alignment:
| Q |
421 |
ttattatacattaaatgataatataaataattttaataa |
459 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
4848648 |
ttattatacattatatgatagtataaataattttaataa |
4848686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 586
Target Start/End: Complemental strand, 35032787 - 35032718
Alignment:
| Q |
517 |
cattaattttgacgataagcttgatctgacaaacgtggactaagaatgacttgtagaggagaagctttga |
586 |
Q |
| |
|
||||||||||||| | ||| || |||||||||| ||| ||||||||||||||| |||||| ||||||| |
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|
| T |
35032787 |
cattaattttgaccaaaagtatgtgctgacaaacgcggattaagaatgacttgtaaaggagaggctttga |
35032718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 459
Target Start/End: Original strand, 2718765 - 2718803
Alignment:
| Q |
421 |
ttattatacattaaatgataatataaataattttaataa |
459 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
2718765 |
ttattatacattatatgataatataaataattttaataa |
2718803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 459
Target Start/End: Original strand, 2721838 - 2721876
Alignment:
| Q |
421 |
ttattatacattaaatgataatataaataattttaataa |
459 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||| |
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| T |
2721838 |
ttattatacattatatgatagtataaataattttaataa |
2721876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 467
Target Start/End: Complemental strand, 14434307 - 14434264
Alignment:
| Q |
424 |
ttatacattaaatgataatataaataattttaataaagtttatg |
467 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| | |||||| |
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| T |
14434307 |
ttatacattatatgataatataaataattttaatacattttatg |
14434264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 495
Target Start/End: Complemental strand, 42237634 - 42237561
Alignment:
| Q |
421 |
ttattatacattaaatgataatataaataattttaataaagtttatgtaatggtgtgatataattcacaccgcga |
495 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||| || |||| |||| | ||||||||||||||| |
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| T |
42237634 |
ttattatacattgtttgataatataaataattttaataagatttgtgcaatgttgtggt-taattcacaccgcga |
42237561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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