View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0390_low_4 (Length: 472)
Name: NF0390_low_4
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0390_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 77 - 431
Target Start/End: Complemental strand, 26926686 - 26926339
Alignment:
| Q |
77 |
aactatttcatcaagactgaaggtggtgtgtaagca-ttcttctgcggttccatactatttttgtggtcacttttgttctatatgcttatgaaagataaa |
175 |
Q |
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| T |
26926686 |
aactatttcatcaagaccgaaggtgc---gtaagcaattcttctgcggttccatactatttttgtggtcacttttgttctatatgcttatgaaagataaa |
26926590 |
T |
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| Q |
176 |
tatggcacagtaaaggtgaaaaatttgatctatagggtaaaagttcaagggtgaagactgaagactt--ctgtga---agtagtttacaaagagattaaa |
270 |
Q |
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| T |
26926589 |
tatggcacagtaaaggtgaaaaatttgatctatagagtaaaagttcaagggtgaagactgaagacttcactgtgaagtagtagtttacaaagagattaaa |
26926490 |
T |
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| Q |
271 |
tattgttgtcatgtgtaatatgtcagaaagaatagtttaatttatataagaacaagcaaatctattggtacattttcgctctgatgttcgaactttttag |
370 |
Q |
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| T |
26926489 |
tattgttgtcatgtgtaatatgtcagaaagaatagtttaatttatataagaacaaacaaatctattggtccatttttactctgatgttcgaactttttag |
26926390 |
T |
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| Q |
371 |
gtaaaatagtcttaaattaaagaaaactgagttattattgtttgggtgcgcaatgacaatt |
431 |
Q |
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| T |
26926389 |
g----------tcaaattaaagaaaactgagttattattgtttgggtgcgcaatgacaatt |
26926339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 26927944 - 26927891
Alignment:
| Q |
30 |
attagggggcaaaaatggtcaaagtttttactgaaaacagtgcagtaaactatt |
83 |
Q |
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| T |
26927944 |
attagggggtaaaaatggtcaaagtttttaccgaaaacagtgtagtaaattatt |
26927891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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