View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0390_low_5 (Length: 442)
Name: NF0390_low_5
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0390_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 42010827 - 42010418
Alignment:
| Q |
1 |
tccaactgaattattttatgattgtagtacatgacaagtgatatctctcctcaagataacagtcctaatttcttttcgaatgttaatgtcagtcataatc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42010827 |
tccaactgaattactttatgattgtaggacatgacaagtgatatctctcctcaagataacagtcctaatttcttttcgaatgttaatgtcagtcataatc |
42010728 |
T |
|
| Q |
101 |
ctctgctacacgtcgtaggaaaagtga----------ttgcgtttgaaatcct-annnnnnnnattggttgttcagtcaccaaccaactctaagagtatt |
189 |
Q |
| |
|
|||| | ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42010727 |
ctctaccgcacgtcgtaggaaaagtgatccgacatggttgcgtttgaaatcctaattttttttattggttgttcagtcaccaaccaactctaagagtatt |
42010628 |
T |
|
| Q |
190 |
gtctaacaaggaaacaataggccaaatctaagatatcaatactagatataaataataggnnnnnnnnncttaagtctttacttcaaatctttttgtacga |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |
|
|
| T |
42010627 |
gtctaacaaggaaacaataggccaaatctaagatatcaatactagatataaataatagg-aaaaaaaacttaagtctttacttcggatctttttgtacaa |
42010529 |
T |
|
| Q |
290 |
ttcttaactaaatatac-nnnnnnngaatataacaaactttagaaaaattatgatttt-nnnnnnncatggtaaatttagttaagagccatacaaaaaag |
387 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||||||||| |
|
|
| T |
42010528 |
ttcttaactaaatatacttttttttgaatataacaaactttcgaaaaattatgattttaagaaaatcatggtaaatttaattaaaaaccatacaaaaaag |
42010429 |
T |
|
| Q |
388 |
caatgatgatg |
398 |
Q |
| |
|
|| |||||||| |
|
|
| T |
42010428 |
cattgatgatg |
42010418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 10945465 - 10945515
Alignment:
| Q |
161 |
ttcagtcaccaaccaactctaaga---gtattgtctaacaaggaaacaata |
208 |
Q |
| |
|
||||||| || ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10945465 |
ttcagtcgcctaccaactctaagaactgtattgtctaacaaggaaacaata |
10945515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 565 times since January 2019
Visitors: 3061