View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0390_low_8 (Length: 322)
Name: NF0390_low_8
Description: NF0390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0390_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 47511978 - 47512109
Alignment:
| Q |
1 |
ttacatttatctcaattccccgttcattcataatttgcattgcaataaaccgttgcaccaataacataccgatgtaatgttaatgttggtcaattaataa |
100 |
Q |
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| T |
47511978 |
ttacatttatctcaattccccgttcattcataatttgcattgcaataaaccgttgcgccaataacataccgatgtaatgttaatgttggtcaattaataa |
47512077 |
T |
|
| Q |
101 |
tgataaatcaatgtgtaatttaagaaaggaaa |
132 |
Q |
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| T |
47512078 |
tgatatatcaatgtgtaatttaaaaaatgaaa |
47512109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 130 - 303
Target Start/End: Complemental strand, 16086111 - 16085928
Alignment:
| Q |
130 |
aaaatgatatagagcacgaaaacatttttcgtgcat-----gc---tacacgataagattattctctcttttatttgaagagaaatctcaaaatatctct |
221 |
Q |
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| T |
16086111 |
aaaatgatatagagcacgacaacatttttcgtgcatatgctgcacttgcacgacaaggttattctctcttttatttgaagagaaatcacaaaatatctct |
16086012 |
T |
|
| Q |
222 |
tgtgagttgtgatagtgttatgtactatagatcaatcttatccttctaattaatatttaaataaa--ctcatggttgatacctt |
303 |
Q |
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| T |
16086011 |
tgtgagttgtgatagtgttatgtactatagatcaatcctatccttttaattaatatttaaataaactctcatggtttatacctt |
16085928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 32722583 - 32722492
Alignment:
| Q |
128 |
ggaaaatgatatagagcacgaaaacatttttcgtgcatgctacacgataagattattctctcttttatttgaagagaaatctcaaaatatct |
219 |
Q |
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| T |
32722583 |
ggaaaataatatagagcacgacagcgtttttcgtgcatgttgcatgacaacgtttctctctcttttatttgatgagaaatcacaaaatatct |
32722492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 127 - 289
Target Start/End: Complemental strand, 543874 - 543709
Alignment:
| Q |
127 |
aggaaaatgatatagagcacgaaaacatttttcgtgcatgctacacgataagattattctctcttttatttgaagagaaatctcaaaatatctc---ttg |
223 |
Q |
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| T |
543874 |
aggaaaatgatatagagcacgacaacatttttcgtgcatgttgcatgacaaggttattctctcttttatttgatgagaaatcataaaatatatctctttg |
543775 |
T |
|
| Q |
224 |
tgagttgtgatagtgttatgtactatagatcaatcttatccttctaattaatatttaaataaactc |
289 |
Q |
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| T |
543774 |
taagttgtgatagcgttatgtactatagatcaatcctatcctattaattaatatttaaataaactc |
543709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 40721059 - 40720958
Alignment:
| Q |
188 |
tcttttatttgaagagaaatctcaaaatatctcttgtgagttgtgatagtgttatgtactatagatcaatcttatccttctaattaatatttaaataaac |
287 |
Q |
| |
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|||||||||||| |||||||| |||| || |||| ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
40721059 |
tcttttatttgatgagaaatcataaaacatatcttttgaattgtgatagtgttatgtactatagatcaatcctatcctattaattaatatttaaataaac |
40720960 |
T |
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| Q |
288 |
tc |
289 |
Q |
| |
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|| |
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|
| T |
40720959 |
tc |
40720958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 127 - 289
Target Start/End: Original strand, 52768978 - 52769141
Alignment:
| Q |
127 |
aggaaaatgatatagagcacgaaaacatttttcgtgcatgctacacgataagattattctctcttttatttgaagagaaatctcaaaatatctcttgtga |
226 |
Q |
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|||||||||||||||||||||| | ||||||||||||| | || ||||| || ||||||||||||||||| |||||||| ||||||||| |||||| |
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| T |
52768978 |
aggaaaatgatatagagcacgatagagtttttcgtgcatgttgcatgataacgtttttctctcttttatttgatgagaaatcacaaaatatcctttgtga |
52769077 |
T |
|
| Q |
227 |
gttgtgatagtgttatg-tactatagatcaatcttatccttctaattaatatttaaataaactc |
289 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
52769078 |
gttgtgatagtgttatgctactatagctcaatcttatcctattaattaatatttaaataaactc |
52769141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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