View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0391-Insertion-1 (Length: 493)
Name: NF0391-Insertion-1
Description: NF0391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0391-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 26691605 - 26691313
Alignment:
| Q |
17 |
ttgttaattaagaaaatcaaggttatgcaacnnnnnnnn---catatcataaaagcaatttacactaaaatatatttctatcattttcttacaaactcaa |
113 |
Q |
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| T |
26691605 |
ttgttaattaagaaaatcaaggttatgcaacaaaaaaaaaaacatatcataaaagcaatttacactaaaatatatttctatcattttcttacaaactcaa |
26691506 |
T |
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| Q |
114 |
acgtatcaacctagtatacctataacgtactcaatccttggtaggcagcaaaccacatacatactcgtatcatggagaatcactaatcatgtagctatat |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26691505 |
acgtatcaacttagtatacctataacgtactcaatccttggtaggcagcaaaccacatacatactcgtatcatggagaatcaccaatcatgtagctatat |
26691406 |
T |
|
| Q |
214 |
ttttagtatttgcaactctcattgtttataatacattaatgcttatttttcatattaaattgaagaggatgtacttgccctcccttacctata |
306 |
Q |
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| T |
26691405 |
ttttagtatttgcaactctcattgtttataatacattaatgcttatttttcatattaaattgaagaggatgtacttgccctcccttacctata |
26691313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 403 - 493
Target Start/End: Complemental strand, 26691217 - 26691127
Alignment:
| Q |
403 |
gatttttcaattattgaaagaatgcattcatctttctcgaatttcaagggaaaatttcctactgtattgagttcaatactctccactttaa |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
26691217 |
gatttttcaattattgaaagaatgcattcatctttctcgaatttcaagggaaaatttcctgctgtattgagttcaatactctcctctttaa |
26691127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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