View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0391-Insertion-2 (Length: 407)
Name: NF0391-Insertion-2
Description: NF0391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0391-Insertion-2 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 14630600 - 14630999
Alignment:
| Q |
7 |
attaacaaaatgctcaacaatgacattcttatattctttgcaataaaaggaggatgtcaatttatcatcataagataaagttaacttccaaaaggagtta |
106 |
Q |
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| T |
14630600 |
attaacaaaatgctcaacaatggcattcttatattctttgcaataaaaggaggatgtcaatttattatcataagataaagttaacttccaaaaggagtta |
14630699 |
T |
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| Q |
107 |
agagaaaacagatttgaaaagaacaattcaatgacaacgatattgacggagtattgcaagtgctcaagtagaaaacaagaagattttaacatttgaactt |
206 |
Q |
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| T |
14630700 |
agagaaaacagacttgaaaagaacaattcaatgacaacgatattaatggagtattgcaagtgctcaagtagaaaacaagaagattttaacatttgaactt |
14630799 |
T |
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| Q |
207 |
atgcttaacacaatctattacacaactggatattataaacaacatgatacataggtttttgataaattaaaagagaatgtgcaattcaaatcatannnnn |
306 |
Q |
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| T |
14630800 |
atgcttaacacaatctgttacacaactggatattataaac-acatgatacataggtttctgataaattaaaagagaatgtgcaattcaaatcatattttt |
14630898 |
T |
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| Q |
307 |
nngtagtcatgtttcttacattttcttcacaacccttttccggttctctttgattttccatctctaggttggaatgttggcttcttgcttatcacgttgc |
406 |
Q |
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| T |
14630899 |
gtgtagtcatgtttcttacattttcttcacaacccttttccggttctctttgattttccatctctcggttggaatgttggcttcttgcttatcacgttgc |
14630998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 187 - 407
Target Start/End: Original strand, 16641374 - 16641594
Alignment:
| Q |
187 |
agattttaacatttgaacttatgcttaacacaatctattacacaactggatattataaacaacatgatacataggtttttgataaattaaaagagaatgt |
286 |
Q |
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| T |
16641374 |
agattttaacatttgaacttatgcttaacacaatctgttacacaactggatattataaacaacatgatacataggtctttgataagttaaaagagaatat |
16641473 |
T |
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| Q |
287 |
gcaattcaaatcatannnnnnngtagtcatgtttcttacattttcttcacaacccttttccggttctctttgattttccatctctaggttggaatgttgg |
386 |
Q |
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| T |
16641474 |
gcaatttaaatcgtatttttctgtaggcatgtttcttacattttcttcacagtctttttccggttctctttgattttccatctctcggttggaatgttgg |
16641573 |
T |
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| Q |
387 |
cttcttgcttatcacgttgca |
407 |
Q |
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| T |
16641574 |
cttcctgcttatcacgttgca |
16641594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 16641270 - 16641379
Alignment:
| Q |
12 |
caaaatgctcaacaatgacattcttatattctttgcaataaaaggaggatgtcaatttatcatcataagataaagttaacttccaaaaggagttaagaga |
111 |
Q |
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| T |
16641270 |
caaaatgatcaacaatgacattcttatattctttgcaatataaggagaatgtcagtttattatcataagataaagttaacttccaaaaagagttgagaga |
16641369 |
T |
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| Q |
112 |
aaacagattt |
121 |
Q |
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| T |
16641370 |
aaacagattt |
16641379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 16632421 - 16632509
Alignment:
| Q |
319 |
ttcttacattttcttcacaacccttttccggttctctttgattttccatctctaggttggaatgttggcttcttgcttatcacgttgca |
407 |
Q |
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| T |
16632421 |
ttcttacattttcttcataaccctgttccggttctctttgattttccatctctcggttggaatgttggcttcttgcttatcacgttgca |
16632509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 15621187 - 15621136
Alignment:
| Q |
167 |
tgctcaagtagaaaacaagaagattttaacatttgaacttatgcttaacaca |
218 |
Q |
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| T |
15621187 |
tgctcgagtagaaaacaaaaagattttaacgtttgaacttatgcttaacaca |
15621136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 15644956 - 15644905
Alignment:
| Q |
167 |
tgctcaagtagaaaacaagaagattttaacatttgaacttatgcttaacaca |
218 |
Q |
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| T |
15644956 |
tgctcgagtagaaaacaaaaagattttaatgtttgaatttatgcttaacaca |
15644905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 38881149 - 38881224
Alignment:
| Q |
155 |
gagtattgcaagtgctcaagtagaaaacaagaagattttaacatttgaacttatgcttaacacaatctattacaca |
230 |
Q |
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| T |
38881149 |
gagtcttgtaagtgctcaaatagaaaacaaaaagatttcaacatttggacttatgcttaacacaatctgttacaca |
38881224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 397
Target Start/End: Original strand, 38881224 - 38881353
Alignment:
| Q |
268 |
ataaattaaaagagaatgtgcaattcaaatcatannnnnnngtagtcatgtttcttacattttcttcacaacccttttccggttctctttgattttccat |
367 |
Q |
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| T |
38881224 |
ataaactaaaagaaaatgcacaattcaaatcatatttttgtgtaggcatgtttcttacacgttcatcacaatccttttccgaaactctttcgttttccat |
38881323 |
T |
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| Q |
368 |
ctctaggttggaatgttggcttcttgctta |
397 |
Q |
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| T |
38881324 |
ctctcggtcgcgatgttggcaacttgctta |
38881353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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