View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0391_low_1 (Length: 392)
Name: NF0391_low_1
Description: NF0391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0391_low_1 |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 41075271 - 41075611
Alignment:
| Q |
30 |
ggttcgtccttgggttgatatgagtacttatgaggaatggccgttgaatgaatgttatgatgaatggggcgaagatgaagactggatcgacaatgatgag |
129 |
Q |
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||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075271 |
ggttcttcgttgggttgatatgagtacttatgaggaatggcggttgaatgaatgttatgatgaatggggcgaagatgaagactggatcgacaatgatgag |
41075370 |
T |
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| Q |
130 |
gcaagtttttatggacatctcaacaaagcatgtggccttacagcaatgattttaatattcacaaatttagtttctatgtgcatatatgaattctttatta |
229 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075371 |
gcaagtttttctggacatctcaacaaagcatgtggccttacagcaatgattttgatattcacaaatttagtttctatgtgcatatatgaattctttatta |
41075470 |
T |
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| Q |
230 |
tcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggggaagattaaagacatgggaa |
329 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075471 |
tcaatcactaaacctgcaggatgagttattgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggggaagattaaagacatgggaa |
41075570 |
T |
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| Q |
330 |
aaagaatgaggactgagagtaagagaaagagaagcagtttt |
370 |
Q |
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| T |
41075571 |
aaagaatgaggactgagagtaagagaaagagaagcattttt |
41075611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 117 - 370
Target Start/End: Complemental strand, 6314 - 6061
Alignment:
| Q |
117 |
cgacaatgatgaggcaagtttttat-ggacatctcaacaaagcatgtggccttacagcaatgattttaatattcacaaatttagtttctatgtgcatata |
215 |
Q |
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| T |
6314 |
cgacaatgatgaggcaagttttttttggacatctcaacaaagtttgtggccttacatcaatgattttgatattcacaaatttagtttctatgtgcatata |
6215 |
T |
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| Q |
216 |
tgaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggggaagat |
315 |
Q |
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| T |
6214 |
tgaattctttatcatcaatctctaaacctgcagaaggatgcagag-tatgaagaaaggtgggagaaatgttttcacgttggtaagctcccaggggaaaag |
6116 |
T |
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| Q |
316 |
taaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcagtttt |
370 |
Q |
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| T |
6115 |
tgaagacatgggaaaaagaatgaggactcagagcaagagatagagaagcagtttt |
6061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 117 - 370
Target Start/End: Complemental strand, 3752 - 3502
Alignment:
| Q |
117 |
cgacaatgatgaggcaagtttttatggacatctcaacaaagcatgtggccttacagcaatgattttaatattcacaaatttagtttctatgtgcatatat |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3752 |
cgacaatgatgaggcaagtttttttggacatctcaacaaagtttgtggccttacatcaatgattttgatattcacaaatttagtttctatgtgcatatat |
3653 |
T |
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| Q |
217 |
gaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggggaagatt |
316 |
Q |
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| T |
3652 |
gaattctttatcatcaatctctaaacctgcagaaggatgcagag-tataaagaaaggtgggagaaatgttttcacgtgggtaagctcccaggggaaaagt |
3554 |
T |
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| Q |
317 |
aaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcagtttt |
370 |
Q |
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|||||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
3553 |
gaagacatgggaaaaagaatgaggact--cagcaagagatagagaagcagtttt |
3502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 4382918 - 4382986
Alignment:
| Q |
187 |
ttcacaaatttagtttctatgtgcatatatgaattctttatt--atcaatcactaaacctgcaggatga |
253 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||| | ||||||| ||||||| |||||||| |
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| T |
4382918 |
ttcacaaattcagtttctatgtgcatatttgaattctttaatacatcaatctctaaaccaacaggatga |
4382986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 4524971 - 4524915
Alignment:
| Q |
187 |
ttcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacc |
243 |
Q |
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|||||||||||||||||| | |||||||||||||| |||| ||||| || ||||||| |
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| T |
4524971 |
ttcacaaatttagtttctttatgcatatatgaattatttaatatcattctctaaacc |
4524915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 444722 - 444783
Alignment:
| Q |
187 |
ttcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcag |
248 |
Q |
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|||||||||||| | | | ||||||||| ||||||||||| |||||||| |||||||||||| |
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| T |
444722 |
ttcacaaatttattgtttgtgtgcatatttgaattctttaatatcaatctctaaacctgcag |
444783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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