View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0392_high_1 (Length: 468)
Name: NF0392_high_1
Description: NF0392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0392_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 186 - 436
Target Start/End: Original strand, 32752950 - 32753199
Alignment:
| Q |
186 |
ctacggtgcattaactgggattatagattccattgttgaccaattattgttattttgtttgttttccacattgnnnnnnncaaaggaaattgtttgctgc |
285 |
Q |
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| T |
32752950 |
ctacggtgcattaactgggattatagattccattgttgaccaattattgttattttgtttgttttcctcattgataaaaacaatggaaattgtttgctgc |
32753049 |
T |
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| Q |
286 |
agtcgcttcacatcaggagaatcgcagaagacagatccacttagcagcatataaccagctataaataaaagatgacaaatgaaaagcataatggtgccat |
385 |
Q |
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| T |
32753050 |
agtcgcttcacatcaggagaatcgcagaagacagatccactt---agcatataaccagctataaataaaagatgacaaatgaaaagcataatggtgccat |
32753146 |
T |
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| Q |
386 |
ttgt--gggtctagtagcataatttgaaagctgagctccattaacacaaggca |
436 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32753147 |
ttgtgggggtttagtagcataatttgaaagctgagctccattaacacaaggca |
32753199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 32752746 - 32752892
Alignment:
| Q |
30 |
gaaagtgtgtgaactgaaatgaatattggtgaatttagaagaaacattggtcgaacatggcacataaattggatgtgatcaaacataaaagagtgaaaga |
129 |
Q |
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| T |
32752746 |
gaaagtgtgtgaactgaaatgaatattggtgaatttagaagaaacattggtcgaacatggcacataaattggatgtgatcaaacataaaagagtgaaaga |
32752845 |
T |
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| Q |
130 |
cgtgagcaactaacattatgcatctgattcactctgcctcaaattga |
176 |
Q |
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| T |
32752846 |
cgtgagcaactaacattatgcatctgattcactctgcctcaaattga |
32752892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 3284620 - 3284504
Alignment:
| Q |
60 |
gaatttagaagaaacattggtcgaacatggcacataaattggatgtgatcaaacataaaagagtgaaagacgtgagcaactaacattatgcatctgattc |
159 |
Q |
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|||| ||||||||| |||||||| ||||| ||||| |||||| || || ||||| ||||||||||||| | ||||||||||| ||||||| ||||||| |
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| T |
3284620 |
gaatatagaagaaaggttggtcgagcatggtacatagattggaggtcttcgaacatgaaagagtgaaagatgcgagcaactaacgttatgcaactgattc |
3284521 |
T |
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| Q |
160 |
actctgcctcaaattga |
176 |
Q |
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| T |
3284520 |
actctgcatgaaattga |
3284504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 3282504 - 3282423
Alignment:
| Q |
266 |
caaaggaaattgtttgctgcagtcgcttcacatcaggagaatcgcagaagacagatccacttagcagcatataaccagctataaa |
350 |
Q |
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| T |
3282504 |
caaaggaaattgttcgttgtagtggctttacatcaggagaatcgcggaagacagatccactt---agcatatagccagctataaa |
3282423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Complemental strand, 3281965 - 3281928
Alignment:
| Q |
396 |
agtagcataatttgaaagctgagctccattaacacaag |
433 |
Q |
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| T |
3281965 |
agtagcataatttgagagctgagctccactaacacaag |
3281928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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