View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0392_low_2 (Length: 428)
Name: NF0392_low_2
Description: NF0392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0392_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 29 - 428
Target Start/End: Original strand, 30704025 - 30704427
Alignment:
| Q |
29 |
aagtccactattcagttaaggaccaataagacgtccacttacagttgaataatacttgcaccggtgaagagctgcatcgcaccaaatgctacgctcagag |
128 |
Q |
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| T |
30704025 |
aagtccactattcagctaaggcccaataagacgtccacttatagttgaagaatacttgcaccggtgaagagctgcatcgcaccaaatgctacactcagag |
30704124 |
T |
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| Q |
129 |
cacctatgaaatatccacttgatacaacgatagcccgagcgaagcgttgtaagggaaaaactatcat--ccacgcataagggtctataaatagggtatgc |
226 |
Q |
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| T |
30704125 |
cacctatgaaatatccacttgatacaacggtagcccgagcgaagcgctgcaagggcaaaactatcatatccacgcataagggtctataaatagggtatgc |
30704224 |
T |
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| Q |
227 |
gtcaccgaaa-gcaaggtacgcattctaagaaatatcgtaaaatctcattgaaacctcgctgacttgagcgttgaagtgtcttttattggtacaccttct |
325 |
Q |
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| T |
30704225 |
gtcaccgaaaagcaaggtacgcattctaagaaatatcgtaaaatctcattgaaacctcgctgacttgagcgttgaagtgtcttttattgatacaccttct |
30704324 |
T |
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| Q |
326 |
gcattagggaaggatttacttcaaccattgtgaaccaccgcggcagttgattcgcaccaccaccgggcaccggccaactcttctattccttgataagaac |
425 |
Q |
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| T |
30704325 |
gcattagggaaggatttacttcaaccattgtgaaccaccgcggcagttgattcgcaccaccaccgggcaccagccaactcttctattccttgataagaac |
30704424 |
T |
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| Q |
426 |
agt |
428 |
Q |
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| T |
30704425 |
agt |
30704427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 49441618 - 49441581
Alignment:
| Q |
284 |
gctgacttgagcgttgaagtgtcttttattggtacacc |
321 |
Q |
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| T |
49441618 |
gctgacttgagcgttgaagtgtcttttgtaggtacacc |
49441581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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