View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0392_low_3 (Length: 334)
Name: NF0392_low_3
Description: NF0392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0392_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 8003612 - 8003714
Alignment:
| Q |
100 |
acttgtactattgctgcatttgagtaaaagatctatattttgatccaaactcaaccacataataagtttgatattcagtctcaatatgttacccagtgtt |
199 |
Q |
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| T |
8003612 |
acttgtactattgctgcatttgagtaaaatatctatattttgatccaaattcaaccacataataagtttgatattcagtctcaatatgttacccagtgtt |
8003711 |
T |
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| Q |
200 |
tgt |
202 |
Q |
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||| |
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| T |
8003712 |
tgt |
8003714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 8003779 - 8003822
Alignment:
| Q |
267 |
cttaataacaaaattatctataaaacgttgtaatattgtatgag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8003779 |
cttaataacaaaattatctataaaacgttgtaatattgtatgag |
8003822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 49773535 - 49773492
Alignment:
| Q |
267 |
cttaataacaaaattatctataaaacgttgtaatattgtatgag |
310 |
Q |
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| T |
49773535 |
cttaataacaaaattatctataaaatgttttaatattgtatgag |
49773492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 49773630 - 49773573
Alignment:
| Q |
130 |
atctatattttgatccaaactcaaccacataataagtttgatattcagtctcaatatg |
187 |
Q |
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||||||||||||| ||||| ||||||| ||| ||||||||||||||| || |||||| |
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| T |
49773630 |
atctatattttgacccaaaatcaaccaagtaacaagtttgatattcagacttaatatg |
49773573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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