View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0394-INSERTION-1 (Length: 443)

Name: NF0394-INSERTION-1
Description: NF0394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0394-INSERTION-1
NF0394-INSERTION-1
[»] chr3 (2 HSPs)
chr3 (83-443)||(53123366-53123726)
chr3 (7-37)||(53123288-53123318)
[»] chr7 (2 HSPs)
chr7 (95-143)||(6504682-6504730)
chr7 (284-350)||(6505046-6505112)


Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 83 - 443
Target Start/End: Original strand, 53123366 - 53123726
Alignment:
Q  83 ttttgacataagtgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttcataataccaagaagtttagttccatctgtatttgcctctt 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53123366 ttttgacataagtgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttcataataccaagaagttcagttccatctgtatttgcctctt 53123465  T
Q  183 cactggttttggttttctcttatacgctggtgaattgctcccaaagggtattagccttttgagaccattttccagaatagttttgttttgtagtatccgg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53123466 cactggttttggttttctcttatacgctggtgaattgctcccaaagggtattagccttttgagaccattttccagaatagttttgttttgtagtatccgg 53123565  T
Q  283 gttggatttgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttttgggaagaatagatactgaacagcacaacgaa 382  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53123566 gttggattcgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttttgggaagaatagatactgaacagcacaacgaa 53123665  T
Q  383 ccaccaatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctga 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53123666 ccaccaatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctga 53123726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 53123288 - 53123318
Alignment:
Q  7 agaacttacactgcaattcttggtaactgtg 37  Q
    |||||||||||||||||||||||||||||||    
T  53123288 agaacttacactgcaattcttggtaactgtg 53123318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 6504682 - 6504730
Alignment:
Q  95 tgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttca 143  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  6504682 tgcaaaatctgaggcacacaagtaaaatgaagatattgaagacctttca 6504730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 6505046 - 6505112
Alignment:
Q  284 ttggatttgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttt 350  Q
    ||||| |||||||||||| ||||||||| ||||| ||||||  ||| ||||||||||||||||||||    
T  6505046 ttggacttgaaccaagcatatggttttcttttgtcaaagctacttggagtgtctttgaggcaatttt 6505112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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