View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0394_high_2 (Length: 262)
Name: NF0394_high_2
Description: NF0394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0394_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 19477765 - 19477992
Alignment:
| Q |
29 |
tcagttgtcattattcactctaaggtaagccaattgattttccaatttcttgttttagggtttcaaaattgggaattggaaatgaaattttgttatgacc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19477765 |
tcagttgtcattattcactctaaggtaagccaattgattttccaatttcttgttttagtgtttcaaaattgggaattggaaatgaaattttgttatgacc |
19477864 |
T |
|
| Q |
129 |
aagttgtttgttagttagaattggaatttcggaatgttaaaaaattgatgcttttgtctcatgtaattggattggatatca--tgtttgttcaaatgtct |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19477865 |
aagttgtttgttagttagaattggaatttcggaatgttaaaaaattgatgcttttgtttcatgtaattggattggatatcagctgtttgttcaaatgtct |
19477964 |
T |
|
| Q |
227 |
gaatgcattttcctttttgcttcatatc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
19477965 |
gaatgcattttcctttttgcttcatatc |
19477992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 45280857 - 45280914
Alignment:
| Q |
48 |
ctaaggtaagccaattgattttccaatttcttgttttagggtttcaaaattgggaatt |
105 |
Q |
| |
|
|||||||||||||||| ||| ||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
45280857 |
ctaaggtaagccaattcattctccaattgcctgttttagggtttcagaattgggaatt |
45280914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 6440415 - 6440360
Alignment:
| Q |
69 |
tccaatttcttgttttagggtttcaaaattgggaattggaaatgaaattttgttat |
124 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
6440415 |
tccaattgcttgttttagggtttcaaaattgagaattggaaatggaattttgttat |
6440360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 6440347 - 6440272
Alignment:
| Q |
114 |
aattttgttatgaccaagttgtttgt----tagttagaattggaatttcggaatgttaaaaaattgatgcttttgt |
185 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
6440347 |
aatttcgttatgaacaagttgtttgtcagttagttagaattggaattttagaatgttagaaagttgatgcttttgt |
6440272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 54053093 - 54053134
Alignment:
| Q |
69 |
tccaatttcttgttttagggtttcaaaattgggaattggaaa |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
54053093 |
tccaatttcttgttttagggttttaaaattgggaatttgaaa |
54053134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 3171822 - 3171869
Alignment:
| Q |
136 |
ttgttagttagaattggaatttcggaatgttaaaaaattgatgcttttgt |
185 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
3171822 |
ttgttagttagaattggaatt--ggaatgttagaaagttgatgcttttgt |
3171869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 9682775 - 9682731
Alignment:
| Q |
43 |
tcactctaaggtaagccaattgattttccaatttcttgttttagg |
87 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| ||||||||||| |
|
|
| T |
9682775 |
tcactctaaggtaacccaattcattctccaattgcttgttttagg |
9682731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 13559025 - 13558973
Alignment:
| Q |
58 |
ccaattgattttccaatttcttgttttagggtttcaaaattgggaattggaaa |
110 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||||| | |||||||||| ||||| |
|
|
| T |
13559025 |
ccaatcgattctccaattgcttgttttagggttttagaattgggaataggaaa |
13558973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1591 times since January 2019
Visitors: 3090