View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0394_low_1 (Length: 422)
Name: NF0394_low_1
Description: NF0394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0394_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 107 - 414
Target Start/End: Complemental strand, 3746136 - 3745829
Alignment:
| Q |
107 |
tcaccatcatttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagat |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3746136 |
tcaccatcatttgaaaaagaagaaacttatgattttgttcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagat |
3746037 |
T |
|
| Q |
207 |
tcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
3746036 |
tcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaacacaactacttcttttggtttagtcaa |
3745937 |
T |
|
| Q |
307 |
cattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagt |
406 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745936 |
cattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagt |
3745837 |
T |
|
| Q |
407 |
ttgttcat |
414 |
Q |
| |
|
|||||||| |
|
|
| T |
3745836 |
ttgttcat |
3745829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 112 - 408
Target Start/End: Complemental strand, 3751948 - 3751652
Alignment:
| Q |
112 |
atcatttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttt |
211 |
Q |
| |
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|||||| |||||| ||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||| | |
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| T |
3751948 |
atcattagaaaaacaagaaacttttgattttgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctat |
3751849 |
T |
|
| Q |
212 |
tggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaacatta |
311 |
Q |
| |
|
|||||||| ||| ||||||| ||||| || ||| |||||||| |||| |||| ||||||||||||||| ||||| |||| |||||| | ||||||||| |
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| T |
3751848 |
tggcatgatatcttgagtgggaaaaatcccactgcaattacaattgttccaccaccattgaagctaaacacaaccacttattttggttcagtcaacatgt |
3751749 |
T |
|
| Q |
312 |
ttgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagttt |
408 |
Q |
| |
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|||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||| ||| |||| |
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| T |
3751748 |
ttgatgaccctttgactataggaccacaattgagttctaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttggttt |
3751652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 119 - 387
Target Start/End: Complemental strand, 3781314 - 3781046
Alignment:
| Q |
119 |
gaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatg |
218 |
Q |
| |
|
|||||| |||| |||| |||||||||||| | ||||| | ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| |
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|
| T |
3781314 |
gaaaaacaagacactttcgattttgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggcatg |
3781215 |
T |
|
| Q |
219 |
acatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaacattattgacaa |
318 |
Q |
| |
|
|| || ||||||||||||| || ||||| || || || | |||| | ||| || |||| |||| || ||||||| || || ||||| |||||||| |
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| T |
3781214 |
acgtcttgagtggaaaaaatccaacttcggttgcaattattccaccatcatcaaaagtaaactcaaccaccgcttttggtttggttaacatgattgacaa |
3781115 |
T |
|
| Q |
319 |
ccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgc |
387 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||| ||||||||| || ||||||||||| |
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|
| T |
3781114 |
ccctttaactttaggaccagaactgagttctaagcttgttggaagagctcaaggattctatgcatctgc |
3781046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 389
Target Start/End: Complemental strand, 3755742 - 3755538
Alignment:
| Q |
185 |
gaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaa |
284 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| || ||||||| |||| |||| |||| ||||| ||| |
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|
| T |
3755742 |
gaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaaaaaccctacttcagttgcagttgtcccaccaccaatgaaactaaactcaa |
3755643 |
T |
|
| Q |
285 |
ctacttcttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatc |
384 |
Q |
| |
|
| ||| | ||||| | |||| ||| || |||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| || |||||||| |
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|
| T |
3755642 |
ccactgcctttggttcagtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatc |
3755543 |
T |
|
| Q |
385 |
tgcat |
389 |
Q |
| |
|
||||| |
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|
| T |
3755542 |
tgcat |
3755538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 119 - 396
Target Start/End: Complemental strand, 3762926 - 3762643
Alignment:
| Q |
119 |
gaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatg |
218 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||||||| || |||||| ||||||||| || ||||| ||||| ||||| ||||||| ||||||| |
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| T |
3762926 |
gaaaatgaagaaacttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatg |
3762827 |
T |
|
| Q |
219 |
acatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaac------tacttcttttgggttagtcaacattat |
312 |
Q |
| |
|
|||| | |||||||| |||||||| |||||||| |||| | || ||||||||| ||| | |||| || | ||||||| |||||| ||| || |
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| T |
3762826 |
acatactaagtggaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagtccgcatgat |
3762727 |
T |
|
| Q |
313 |
tgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaagga |
396 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||| |||||||||| ||||||||| || ||||||||||||||| |||| |
|
|
| T |
3762726 |
tgacaaccctttgactttaggacccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgcatcacagga |
3762643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 114 - 396
Target Start/End: Complemental strand, 3777006 - 3776724
Alignment:
| Q |
114 |
catttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttg |
213 |
Q |
| |
|
|||| ||||||||||| || | ||||||||||||| ||||||| | || |||||| ||||||||| || ||||||||||||||||||| ||| | ||| |
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|
| T |
3777006 |
cattagaaaaagaagatacctttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattg |
3776907 |
T |
|
| Q |
214 |
gcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaacattatt |
313 |
Q |
| |
|
||||||||| | ||||||||||| || ||||| || || |||| |||| | ||| || |||| |||| |||| |||||| ||||| | ||| ||| |
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|
| T |
3776906 |
gcatgacatagttagtggaaaaaatccaacttcggttgcaattgttccaccatcatcaaaagtaaactcaaccactttttttggtttagttagcatgatt |
3776807 |
T |
|
| Q |
314 |
gacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaagga |
396 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |||||||| | ||||||||| || ||||||||||| ||| |||| |
|
|
| T |
3776806 |
gacaaccctttaactttaggacccgaattgagttctaaacttgttggtagagctcaaggattctatgcatctgcttcacagga |
3776724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 185 - 375
Target Start/End: Complemental strand, 3771500 - 3771310
Alignment:
| Q |
185 |
gaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatacaa |
284 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| || || |||||||||||||||| |||| | | | |||| |||| |||| |||| ||||| |||| |
|
|
| T |
3771500 |
gaaaaactaagtcatttcagattctactggcacgagatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaa |
3771401 |
T |
|
| Q |
285 |
ctacttcttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggtt |
375 |
Q |
| |
|
| ||| ||||||| | |||| ||| || |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
3771400 |
ccactgcttttggttcagtccgcatgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggtt |
3771310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 136 - 389
Target Start/End: Complemental strand, 3767313 - 3767066
Alignment:
| Q |
136 |
tgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaa |
235 |
Q |
| |
|
||||||||||||| ||||||| | || |||||| ||||||||| || ||||||||||||||||||| ||| | |||||||||||| ||||||||||| |
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|
| T |
3767313 |
tgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaa |
3767214 |
T |
|
| Q |
236 |
aaccctacttcaattacagttgtaccactaccattgaagctaaatacaactacttcttttgggttagtcaacattattgacaaccctttaactttaggac |
335 |
Q |
| |
|
||||||||||| || |||| | |||| | |||| || | |||| ||| | ||||| | |||| ||| || |||||||||||||||||||||| |
|
|
| T |
3767213 |
aaccctacttctatcgtagttattccaccatcatt-----aaactccaac-actgcctttggttcagtccgcatgatcgacaaccctttaactttaggac |
3767120 |
T |
|
| Q |
336 |
caaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcat |
389 |
Q |
| |
|
|| | ||| ||||||| ||||||||||||||||||| || ||||||||||||| |
|
|
| T |
3767119 |
cacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcat |
3767066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 381
Target Start/End: Original strand, 25985266 - 25985461
Alignment:
| Q |
183 |
aagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaatac |
282 |
Q |
| |
|
|||| |||||||| ||||| | ||||| |||||||||||| | |||||||| |||||| ||||||| || |||| |||| ||| ||||| ||| | |
|
|
| T |
25985266 |
aagagaagctaagccatttaaaattctattggcatgacatagttagtggaaacaacccttcttcaataccaattgttccaccacctttgaa---aaactc |
25985362 |
T |
|
| Q |
283 |
aactacttcttttgggttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgc |
381 |
Q |
| |
|
||| ||| ||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||||| || | ||||||||||| ||||| || ||||| |
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|
| T |
25985363 |
aaccactgcttttggtttagttaacatgattgagaaccctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgc |
25985461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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