View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0394_low_2 (Length: 405)
Name: NF0394_low_2
Description: NF0394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0394_low_2 |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 64 - 400
Target Start/End: Complemental strand, 4229429 - 4229093
Alignment:
| Q |
64 |
aatggatgtgggtcaccgcgacggaggatggtgacggtggtggtgggaggacggaggtggtgcgaggacgatggttgtggacttgtggttcagttctgag |
163 |
Q |
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|||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4229429 |
aatggacgtgggtcatcgcgacggaggatggtgacgatggtggtgggaggacggaggtggtgcgaggacggtggttgtggacttgtggttcagttctgag |
4229330 |
T |
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| Q |
164 |
agaaaccaaacagaggagagaatggggcacgaggtagagaaatagaagagggtgtgtagtggttttacaaagttgcccttaacttaaggttgaaatgaca |
263 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4229329 |
agaaactaaacagaggagagaatggggcacggggtagagaaatagaagagggtgtgtattggttttacaaagctgcccttaacttaaggttgaaatgaca |
4229230 |
T |
|
| Q |
264 |
aaaaagcccatggtgttggtattatgtctaaaattttgtgtctagttatcattcctcctattaaaaataaacattgactaattaaaattttgaatttcga |
363 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4229229 |
aaaaagcccatggtgttggtattgtgtctaaaattttgtatctagttatcattcctcctattaaaaatagacattgactaattaaaattttgaatttcga |
4229130 |
T |
|
| Q |
364 |
ttacgggagtttttccatattttttgttcatctcact |
400 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
4229129 |
ttacgggagtttttccatattttttgttcatcacact |
4229093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 38301270 - 38301207
Alignment:
| Q |
256 |
aaatgacaaaaaagcccatggtgttggtattatgtctaaaattttgtgtctagttatcattcctc |
320 |
Q |
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| T |
38301270 |
aaatgacaaaactgtccatggtgttggtattgtgtccaaaa-tttgtggctagttatcgttcctc |
38301207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 64 - 320
Target Start/End: Complemental strand, 1278 - 1016
Alignment:
| Q |
64 |
aatggatgtgggtcaccgcgacggaggatggtgacggtg------gtggtgggaggacggaggtggtgcgaggacgatggttgtggacttgtggttcagt |
157 |
Q |
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|||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1278 |
aatggacgtgggtcaccgcgacggaggatggtgatggtgatggtggtggtgggaggacggaggtggtgcgaggacggtggttgtggacttgtggttcagt |
1179 |
T |
|
| Q |
158 |
tctgagagaaaccaaacagaggagagaatggggcacgaggtagagaaatagaagagggtgtgtagtggttttacaaagttgcccttaacttaaggttgaa |
257 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1178 |
tctgagagaaactaaacagaggagagaatggggcacgaggtagagaaatagaagagggtgtgtagtggttttacaaagctgcccttaacttaaggttgaa |
1079 |
T |
|
| Q |
258 |
atgacaaaaaagcccatggtgttggtattatgtctaaaattttgtgtctagttatcattcctc |
320 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |
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| T |
1078 |
atgacaaaaaagcccatggtgttgatattgtgtctaaaattttgtgtctaattatcattcctc |
1016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 64 - 321
Target Start/End: Original strand, 4154517 - 4154778
Alignment:
| Q |
64 |
aatggatgtgggtcaccgcgacggaggatggtgacggtggtggtgggaggacggaggtggtgcgaggacgatggttgtggacttgtggttcagttctgag |
163 |
Q |
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|||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |||| |
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| T |
4154517 |
aatggacgggggtcactgcgtcggaggatggtgacggtggtggtgggaggacggaggtgttgcgaggacagtggttatggacttgtggttcagttatgag |
4154616 |
T |
|
| Q |
164 |
agaaaccaaacagaggagagaatgg----ggcacgaggtagagaaatagaagagggtgtgtagtggttttacaaagttgcccttaacttaaggttgaaat |
259 |
Q |
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| T |
4154617 |
agaaactaaacagaagagagaatgaatatggcacgaggtagagaaacagaagagggtgcgtagtggttttacaaagctgcccttaacttaaggttgaaat |
4154716 |
T |
|
| Q |
260 |
gacaaaaaagcccatggtgttggtattatgtctaaaattttgtgtctagttatcattcctcc |
321 |
Q |
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|||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4154717 |
aacaaaattgcctatggtgttggtattgtgtctaaaattttgtgtctagttatcattcctcc |
4154778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 41642940 - 41642871
Alignment:
| Q |
250 |
aggttgaaatgacaaaaaagcccatggtgttggtattatgtctaaaattttgtgtctagttatcattcct |
319 |
Q |
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|||||||||| |||||| | ||||| ||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
41642940 |
aggttgaaataacaaaattgtccatgatgttgatattgtgtctaaaattttgtgtctagttatcattcct |
41642871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 64 - 329
Target Start/End: Original strand, 53305101 - 53305368
Alignment:
| Q |
64 |
aatggatgtgggtcaccgcgacggaggatggtgacggtggtggtgggaggacggaggtggtgcgaggacgatggttgtggacttgtggttcagttctgag |
163 |
Q |
| |
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|||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |
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| T |
53305101 |
aatggacgggggtcactgcgtcggaggatggtgacggtggtggtgggaggacggaggtgttgcgaggacagtggttatggacttgtggttcagttctgag |
53305200 |
T |
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| Q |
164 |
agaaaccaaacagaggagaga-------atggggcacgaggtagagaaatagaagagggtgtgtagtggttttacaaagttgcccttaacttaaggttga |
256 |
Q |
| |
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|||||| ||||||| |||||| ||| ||||||||||||||||| | |||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
53305201 |
agaaactaaacagaagagagaatgaatgatgtggcacgaggtagagaaacaaaagagggtgtgtggtggttttacaaagctgcccttaacttaaggttga |
53305300 |
T |
|
| Q |
257 |
aatgacaaaaaagcccatggtgttggtattatgtctaaaattttgtgtctagttatcattcctcctattaaaa |
329 |
Q |
| |
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|||||||||| | | |||||||||| ||| ||||||||||||||||||||||||||||| | |||||| |
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| T |
53305301 |
aatgacaaaa-----ctggatgttggtattgtgtttaaaattttgtgtctagttatcattcctcgttttaaaa |
53305368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 26335554 - 26335653
Alignment:
| Q |
226 |
ttttacaaagttgcccttaacttaaggttgaaatgacaaaaaagcccatggtgttggtattatgtctaaaattttgtgtctagttatcattcctcctatt |
325 |
Q |
| |
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||||||||| ||||||||| ||| |||||||||||||||| | ||||||||||| | || ||| || ||||||||| | |||||||||||| |||| |
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| T |
26335554 |
ttttacaaaattgcccttattttatggttgaaatgacaaaactgtccatggtgttgtttttgtgttaaatattttgtgttcacttatcattcctcttatt |
26335653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 14699623 - 14699733
Alignment:
| Q |
210 |
agagggtgtgtagtggttttacaaagttgcccttaacttaaggttgaaatgacaaaaaagcccatggtgttggtattatgtctaaaattttgtgtctagt |
309 |
Q |
| |
|
|||| ||||||||||||||||| || |||||| | || |||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
14699623 |
agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt |
14699722 |
T |
|
| Q |
310 |
tatcattcctc |
320 |
Q |
| |
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||||||||||| |
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| T |
14699723 |
tatcattcctc |
14699733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 8551680 - 8551572
Alignment:
| Q |
208 |
gaagagggtgtgtagtggttttacaaagttgcccttaacttaaggttgaaatgacaaaaaagcccatggtgttggtattatgtctaaaattttgtgtcta |
307 |
Q |
| |
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|||||| ||||||||||||||||| || ||||||| | || |||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
8551680 |
gaagagagtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtcta |
8551581 |
T |
|
| Q |
308 |
gttatcatt |
316 |
Q |
| |
|
|||||||| |
|
|
| T |
8551580 |
attatcatt |
8551572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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