View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0395_high_2 (Length: 490)
Name: NF0395_high_2
Description: NF0395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0395_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 30 - 490
Target Start/End: Complemental strand, 2490868 - 2490408
Alignment:
| Q |
30 |
attttgtccttcggcatctttcttctttttctgctgtcgaaaacaaatatagcaatcagcatgataatcataggataataggattatagtaaatctttag |
129 |
Q |
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| T |
2490868 |
attttgtccttcggcatctttcttctttttctgctgccgaaaacaaatatagcaatcagcatgataatcataggataataggattatagtaaatctttag |
2490769 |
T |
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| Q |
130 |
agaaattgccaagttaccgaatccttttgtatctcttgctgaattagctctctaacaggtctataagcagcggttgtgcataagttctgcatttaacaat |
229 |
Q |
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| T |
2490768 |
agaaattgccaagttaccgaatccttttgtatctcttgctgaattagctctctaacaggtctataagcagcggttgtgcataagttctgcatttaacaat |
2490669 |
T |
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| Q |
230 |
taatgaaaatggaaaatgcattaagacatcagaaactaaacataagaaaagcatttgtagattgtaacacgatagttaagttacggccataggaaaacaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490668 |
taatgaaaatggaaaatgcattaagacatcagaaactaaacataagaaaagcatttgtagattgtaacacgatagttaagttacggccataggaaaacaa |
2490569 |
T |
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| Q |
330 |
taatagagaaaaaccttcagatcacttccactatatccttcagtcatagttgcgagttccttaaaatcaagtcccccgtgcaccttctctttagccaaaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490568 |
taatagagaaaaaccttcagatcacttccactatatccttcagtcatagttgcgagttccttaaaatcaagtcccccgtgcaccttctctttagccaaaa |
2490469 |
T |
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| Q |
430 |
gggtcctcaatatattttctctgttctctgcagacggtagcccaaccatcatcctggtaat |
490 |
Q |
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| T |
2490468 |
gggtcctcaatatattttctctgttctctgcggacggtagcccaaccataatcctggtaat |
2490408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 41589433 - 41589494
Alignment:
| Q |
161 |
tctcttgctgaattagctctctaacaggtctataagcagcggttgtgcataagttctgcatt |
222 |
Q |
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| T |
41589433 |
tctcttgctgaatcaactctctaactggccgataagcagcagttgtgcacaagttctgcatt |
41589494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 45989493 - 45989453
Alignment:
| Q |
341 |
aaccttcagatcacttccactatatccttcagtcatagttg |
381 |
Q |
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| T |
45989493 |
aaccttaagatcacttccactatatccttctgtcatagttg |
45989453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 44936113 - 44936073
Alignment:
| Q |
341 |
aaccttcagatcacttccactatatccttcagtcatagttg |
381 |
Q |
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| T |
44936113 |
aaccttaagatcacttccgctatatccttctgtcatagttg |
44936073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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