View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0395_high_3 (Length: 364)
Name: NF0395_high_3
Description: NF0395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0395_high_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 37 - 352
Target Start/End: Original strand, 31545869 - 31546184
Alignment:
| Q |
37 |
aaatgcgtacagcttcacgcgcaccttccccctatgttctcatcatcattgttcctttccttattaaagttcatgtgttcttcttttgacaatttaaaat |
136 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31545869 |
aaatccgtacagcttcatgcgcaccttccccctatgttctcatcatcattgttcctttccttattaaagttcatgtgttcttcttttgacaatttaagat |
31545968 |
T |
|
| Q |
137 |
taaaatcaaaaacctcaaacttttgattctaaaccctaattttcttcccttccaaatttgaaatatagccttttattttgcctcagatttgatggtgttt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31545969 |
taaaatcaaaaacctcaaacttttgattctaaaccctaattttcttccctttcaaatttgaaatatagccttttattttgcctcagatttgatggtgttt |
31546068 |
T |
|
| Q |
237 |
taatttggaaaagaaaaacctaatcccttataatctttaatatgaaattgtgttcaacttatgactttgttgttttctgttaaagtgttttgtgaacttt |
336 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31546069 |
taatttggaaaagaaaaacctaatcccttatactctttaatatgaaattgtgttcaacttatgactttgttgttttctgttaaagtgttttgtgaacttt |
31546168 |
T |
|
| Q |
337 |
gtgttaaagataccta |
352 |
Q |
| |
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|||||||||||||||| |
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| T |
31546169 |
gtgttaaagataccta |
31546184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 65 - 345
Target Start/End: Complemental strand, 44163627 - 44163355
Alignment:
| Q |
65 |
cccctatgttctcatcatcattgttcctttccttattaaagttcatgtgttcttcttttgacaatttaaaattaaaatcaaaaacctcaaacttttgatt |
164 |
Q |
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||||| |||||||||||||||||||||| ||||| | || |||| ||||||||| | |||||||| || ||||||||||||| |||||||||||||||| |
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| T |
44163627 |
cccctttgttctcatcatcattgttcctctccttgctcaaattcacgtgttcttcgtatgacaatt-aacattaaaatcaaaagcctcaaacttttgatt |
44163529 |
T |
|
| Q |
165 |
ctaaaccctaattttcttcccttccaaatttgaaatatagccttttattttgcctcagatttgatggtgttttaatttggaaaagaaaaacctaa-tccc |
263 |
Q |
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|||||| || |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||| || ||| ||||| ||| |
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| T |
44163528 |
ataaacctcaaatttcttcccttccaaattcgaaatattgccttttattttgtttcagatttgatggtgttttgatttg----ag-aaaccctaaccccc |
44163434 |
T |
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| Q |
264 |
ttataatctttaatatgaaattgtgttcaacttatgactttgttgttttctgttaaagtgttttgtgaactttgtgttaaag |
345 |
Q |
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|| || ||| |||| |||||||| |||||| ||| | |||||||||||| ||||||||||||||||| | |||||||||| |
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| T |
44163433 |
ttctactctctaatctgaaattgggttcaa--tataaggttgttgttttctattaaagtgttttgtgaa-tctgtgttaaag |
44163355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 38727665 - 38727575
Alignment:
| Q |
152 |
caaacttttgattctaaaccctaattttcttcccttccaaatttgaaatatagccttttattttgcctcagatttgatggtgttttaattt |
242 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||||| |||||||| |||||| |||| |
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| T |
38727665 |
caaacttttgattctaaaccctaagtttcttccctttcaaattcgaaatataaccttttattttgccttgaatttgatgttgttttgattt |
38727575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 65 - 345
Target Start/End: Original strand, 41424894 - 41425166
Alignment:
| Q |
65 |
cccctatgttctcatcatcattgttcctttccttattaaagttcatgtgttcttcttttgacaatttaaaattaaaatcaaaaacctcaaacttttgatt |
164 |
Q |
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||||| |||||| ||||||||||||||| ||||| | || |||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||| |
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| T |
41424894 |
cccctttgttcttatcatcattgttcctctccttgctcaaattcatgtgttcttcttttgacaatttaagattaaaaccaaaagccccaaacttttgatt |
41424993 |
T |
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| Q |
165 |
ctaaaccctaattttcttcccttccaaatttgaaatatagccttttattttgcctcagatttgatggtgttttaatttggaaaagaaaaacctaatccct |
264 |
Q |
| |
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|||||| || |||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||||| ||||| || ||| ||||| |||| |
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| T |
41424994 |
ataaacctcaaatttcttcccttccaaattcgaaatattgctttttattttgtttcagatttgatggtgttttgatttg----ag-aaatcctaacccct |
41425088 |
T |
|
| Q |
265 |
tataatctttaatatgaaattgtgttcaacttatgactttgttgttttctgttaaagtgttttgtgaactttgtgttaaag |
345 |
Q |
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| || ||| |||| ||||||| |||||| ||| |||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
41425089 |
tctactctctaatccgaaattgggttcaa--tatagggttgttgttttctattaaagtgttttgtgaa-tttgtgttaaag |
41425166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 28070904 - 28070986
Alignment:
| Q |
156 |
cttttgattctaaaccctaattttcttcccttccaaatttgaaatatagccttttattttgcctcagatttgatggtgttttaatttg |
243 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||| |||||| ||||| |
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| T |
28070904 |
cttttgattctaaaccctaagtttcttcccttccaa-----aaatataaccttttattttgccttgaatttgatgttgttttgatttg |
28070986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 65 - 243
Target Start/End: Complemental strand, 1068639 - 1068461
Alignment:
| Q |
65 |
cccctatgttctcatcatcattgttcctttccttattaaagttcatgtgttcttcttttgacaatttaaaattaaaatcaaaaacctcaaacttttgatt |
164 |
Q |
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||||| |||||| ||||||||||||||| ||||| | || ||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||| |
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| T |
1068639 |
cccctttgttcttatcatcattgttcctctccttgctcaaattcatgtgttcttcttttgacgatttaagattaaaatcaaaagccccaaacttttgatt |
1068540 |
T |
|
| Q |
165 |
ctaaaccctaattttcttcccttccaaatttgaaatatagccttttattttgcctcagatttgatggtgttttaatttg |
243 |
Q |
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|||||| || |||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||| ||||| |
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| T |
1068539 |
ataaacctcaaatttcttcccttccaaattcaaaatattgctttttattttgtttcagatttgatggtgttttgatttg |
1068461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 157 - 332
Target Start/End: Original strand, 105088 - 105258
Alignment:
| Q |
157 |
ttttgattctaaaccctaattttcttcccttccaaatttgaaatatagccttttattttgcctcagatttgatggtgttttaatttggaaaagaaaaacc |
256 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||| |||| || | |||| ||||| |||| || |
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| T |
105088 |
tttttattctaaaccctaattttcttcccttccaaattccgaatgtagcctctaattttgcctcatgtttgttgttattttgatttg-----aaaaaccc |
105182 |
T |
|
| Q |
257 |
taatcccttataatctttaatatgaaattgtgttcaacttatgactttgttgttttctgttaaagtgttttgtgaa |
332 |
Q |
| |
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||| |||||||| ||| |||| |||||||||||| || |||||| | |||||||||| ||| ||||||| |||||| |
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| T |
105183 |
taaccccttatattctctaatctgaaattgtgttaaatttatgaatatgttgttttcagttgaagtgttatgtgaa |
105258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 11763762 - 11763825
Alignment:
| Q |
152 |
caaacttttgattctaaaccctaattttcttcccttccaaatttgaaatatagccttttatttt |
215 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| || |||||||| ||||||||||| |
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| T |
11763762 |
caaacttttgattctaatccctaatttttttcccttccaatttcgaaatataaccttttatttt |
11763825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 23275911 - 23275835
Alignment:
| Q |
167 |
aaaccctaattttcttcccttccaaatttgaaatatagccttttattttgcctcagatttgatggtgttttaatttg |
243 |
Q |
| |
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||||||||| |||||||||||| ||||| |||||||| ||||||||||||||| |||||||| |||||| ||||| |
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| T |
23275911 |
aaaccctaagtttcttcccttctaaattcgaaatataaccttttattttgccttgaatttgatgttgttttgatttg |
23275835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 51028374 - 51028437
Alignment:
| Q |
121 |
tttgacaatttaaaattaaaatcaaaaacctcaaacttttgattctaaaccctaattttcttccc |
185 |
Q |
| |
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|||| ||||||| | || ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51028374 |
tttgccaatttatactttaaatcaaaaacctcaaacttt-gattctaaaccctaattttcttccc |
51028437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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