View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0395_high_5 (Length: 349)
Name: NF0395_high_5
Description: NF0395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0395_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 30 - 337
Target Start/End: Complemental strand, 39728060 - 39727754
Alignment:
| Q |
30 |
aatacttcttccattagcaatgcatgtaacccaacacgcatgatagaatcaaatacatatagatacattgacccttcatcaaggagaaattagatagtga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39728060 |
aatacttcttccattagcaatgcatgtaacccaacacgcatgatagaatcaaatacatatagatacattgacccttcatcaaggagaaattagatagtga |
39727961 |
T |
|
| Q |
130 |
cctggtcttttggacttcaattcgcaaatgttttcactaagggaggacttccaacaaagtggtttcaagatcttgcaagcagggaatgattgacattgct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39727960 |
cctggtcttttggacttcaattcgcaaatgttttcactaagggaggacttccaacaaagtggtttcaagatcttgcaagcagggaatgattgacattgct |
39727861 |
T |
|
| Q |
230 |
tgaagggagagttgtaaatatgcaattggcgcccatttaggattagaatattctcggtacatatttagctatatatgtaactattgaacagaattcttta |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39727860 |
tgaagggagagttgtaaatatgcaattggcgcccatttagga-tagaatattctcggtacatatttagctatatatgtaactattgaacagaattcttta |
39727762 |
T |
|
| Q |
330 |
ccaagaat |
337 |
Q |
| |
|
|||||||| |
|
|
| T |
39727761 |
ccaagaat |
39727754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1071 times since January 2019
Visitors: 3075