View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0395_high_6 (Length: 308)
Name: NF0395_high_6
Description: NF0395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0395_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 292
Target Start/End: Complemental strand, 16064247 - 16063961
Alignment:
| Q |
6 |
gtagtcttctactacaaccttcacatttagcactactccctatggttcttcttaagttctgttaactaacgttattaactgtttcaggtagtgtcatcat |
105 |
Q |
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| T |
16064247 |
gtagtcttctactacaaccttcacatttagcactactccctctggttcttcttaagttctgtcagctaacgttattaactgttttaggtagtgtcatcat |
16064148 |
T |
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| Q |
106 |
gagtctttcgatctttctgaatttcgcaagcgatgtcaggttgattttatctcctaattcacataaaacattccccaagaatacatcattaatggatatt |
205 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
16064147 |
gagtctttcgatctttctgaatttcgcaagcgacgtcaggttgattttatctcctaattcacataaaacattccgcaagaatacaccattaatggatatt |
16064048 |
T |
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| Q |
206 |
agaacattgaagctccctggatctctaatcttgttgttggagtttgtttcagtgttggtatggtaatctctaactgatgatgtccat |
292 |
Q |
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| T |
16064047 |
agaacattgaagctccctggatctctaatcttgatgttggagtttgtttcagtgttggtatggtaatctctaactaatgatatccat |
16063961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 18385493 - 18385210
Alignment:
| Q |
8 |
agtcttctactacaaccttcacatttagcactactccctatggttcttcttaagttctgttaactaacgttattaactgtttcaggtagtgtcatcatga |
107 |
Q |
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|||||| |||| ||||||||||||||| ||||||||||| ||||||||||| ||||| | | ||| | || || || ||||| | | ||||||||| |
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| T |
18385493 |
agtcttatactgcaaccttcacatttaacactactccctctggttcttcttcagttccatcagctacccgtactagct-tttcaactgatatcatcatga |
18385395 |
T |
|
| Q |
108 |
gtctttcgatctttctgaatttcgcaagcgatgtcaggttgattttatctcctaattcacataaaacattccccaagaatacatcattaatggatattag |
207 |
Q |
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||||||| |||||||||||| | ||||| || ||||||||||||| ||||||| ||||||||| ||| |||||||||||| ||||||| || ||| | |
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| T |
18385394 |
gtctttcaatctttctgaatgttgcaagtgacatcaggttgattttggctcctaaatcacataaagcatcacccaagaatacaccattaatagagattgg |
18385295 |
T |
|
| Q |
208 |
aacattgaagctccctggatctctaatcttgttgttggagtttgtttcagtgttggtatggtaatctctaactgatgatgtccat |
292 |
Q |
| |
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||||||||||||||| |||| |||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||| ||||| |
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| T |
18385294 |
aacattgaagctcccactatctttaatcttgatgttggattttgttttagtgttggtatggtaatctccgactaatgatatccat |
18385210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 16782616 - 16782350
Alignment:
| Q |
8 |
agtcttctactacaaccttcacatttagcactactccctatggttcttcttaagttctgttaactaacgttattaactgtttcaggtagtgtcatcatga |
107 |
Q |
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||||||||| | ||||||||||||||| ||| ||||| | ||||||||||| |||||||| | ||| | | | || || |||||| | | ||||||| | |
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| T |
16782616 |
agtcttctattgcaaccttcacatttaacaccactccttctggttcttctttagttctgtcagctaccctcaatagct-tttcagttggcatcatcataa |
16782518 |
T |
|
| Q |
108 |
gtctttcgatctttctgaatttcgcaagcgatgtcaggttgattttatctcctaattcacataaaacattccccaagaatacatcattaatggatattag |
207 |
Q |
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||| || |||||||| ||| | ||||| | ||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||| || ||| | |
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| T |
16782517 |
gtccatcaatctttctaaatgttacaagcaacatcaggttgatttttgctcctaattcacataaacaattccccaagaaaacaccattaatagagattgg |
16782418 |
T |
|
| Q |
208 |
aacattgaagctccctggatctctaatcttgttgttggagtttgtttcagtgttggtatggtaatctc |
275 |
Q |
| |
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||||||||||||||| |||| | |||||||| |||||||||||| || |||||| ||||||||||||| |
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| T |
16782417 |
aacattgaagctcccaggatatttaatcttgatgttggagtttggtttagtgttagtatggtaatctc |
16782350 |
T |
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