View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0395_high_7 (Length: 307)
Name: NF0395_high_7
Description: NF0395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0395_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 39296655 - 39296878
Alignment:
| Q |
7 |
ccatcaccattatcagaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39296655 |
ccatcaccattatcagaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcat |
39296754 |
T |
|
| Q |
107 |
tagtttcttcacctcctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39296755 |
tagtttcttcacctcctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaac |
39296854 |
T |
|
| Q |
207 |
aggttctggaatttgtgtgttcct |
230 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39296855 |
aggttctggaatttgtgtgttcct |
39296878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 39289775 - 39289996
Alignment:
| Q |
7 |
ccatcaccattatcagaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39289775 |
ccatcaccattatcagaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcat |
39289874 |
T |
|
| Q |
107 |
tagtttcttcacctcctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39289875 |
tagtttcttcacctcctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaac |
39289974 |
T |
|
| Q |
207 |
aggttctggaatttgtgtgttc |
228 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
39289975 |
aggttctgggatttgtgtgttc |
39289996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1634 times since January 2019
Visitors: 3091