View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0395_low_4 (Length: 353)
Name: NF0395_low_4
Description: NF0395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0395_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 16064207 - 16064516
Alignment:
| Q |
14 |
agggagtagtgctaaatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16064207 |
agggagtagtgctaaatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaatgtacctaattgtccagtcactttgggtaa |
16064306 |
T |
|
| Q |
114 |
accttttctggccactgcacaggcacgaattaacttagaatataaggagattatgctgaaaacgtaaatacttgatacacaatatctcacaggataacat |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |
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| T |
16064307 |
accttttctggccact-cacaggcacgaattaacttagaatataaggagattatgttgcaaacgtaaatacttgatacacaatatctcacaggataaaat |
16064405 |
T |
|
| Q |
214 |
aaggaaagatgcatgtaccgaatgccagtcaatggatgaagtcgatccttgtaaccccaatgaagacatagaacaacttcaagaagatcaagaggattat |
313 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16064406 |
aaggaaagatgcaggtaccgaatgccagtcaatggatgaagtcgatccttgtaaccccaatgaagacatagaacaacttcaagaatatcaagaggattat |
16064505 |
T |
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| Q |
314 |
gaagtagcaga |
324 |
Q |
| |
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|||| |||||| |
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| T |
16064506 |
gaagcagcaga |
16064516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 6040851 - 6040739
Alignment:
| Q |
16 |
ggagtagtgctaaatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtagac |
115 |
Q |
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||||| ||||| |||||| ||||||| |||||||||| | | ||||| | |||||||||||||| || ||| |||||||||| |||||||| ||| |
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| T |
6040851 |
ggagtggtgcttaatgtgcaggttgttgtagaagacttcaaattcttggcggacatagtagtgatggacaaaccagattgtccagtaactttgggcagaa |
6040752 |
T |
|
| Q |
116 |
cttttctggccac |
128 |
Q |
| |
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||||||| ||||| |
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| T |
6040751 |
cttttcttgccac |
6040739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 16782580 - 16782859
Alignment:
| Q |
16 |
ggagtagtgctaaatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtagac |
115 |
Q |
| |
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||||| ||| ||||||||||||||| | ||||||||| ||||||||||| | |||| ||||| ||| || ||| | |||||||||| ||| |||| |||| |
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| T |
16782580 |
ggagtggtgttaaatgtgaaggttgcaatagaagacttcgagttcttagcagacattgtagtaatggacatacatgattgtccagtaactctgggcagac |
16782679 |
T |
|
| Q |
116 |
cttttctggccactgcacaggcacgaattaacttagaatataaggagattatgctg-----aaaacgtaaatacttgatacacaatatctcacaggataa |
210 |
Q |
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| T |
16782680 |
cttttttggccattgcacaagcccgaatcaaattagaatacaaggagatcgtgttgaaggcaagaggtaaatacttgatacatcaaatttcgcaggataa |
16782779 |
T |
|
| Q |
211 |
cataaggaaagatgcatgtaccgaatgccagtcaatggatgaagtcgatccttgtaaccccaatgaagacatagaacaac |
290 |
Q |
| |
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|||||||||||||||| |||| |||||||| || |||| || |||||||||| ||| | |||||||||||||||||| |
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| T |
16782780 |
cataaggaaagatgcaggtactgaatgccatacagtggaggacgtcgatccttataaatctcatgaagacatagaacaac |
16782859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 18385455 - 18385611
Alignment:
| Q |
14 |
agggagtagtgctaaatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtag |
113 |
Q |
| |
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||||||||||| ||||||||||||||| |||| |||||| ||||||||||| | ||||| |||| ||| || ||||| ||||||||||||||||||| || |
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| T |
18385455 |
agggagtagtgttaaatgtgaaggttgcagtataagacttcgagttcttagcatacatactagtaatggacatacctgattgtccagtcactttgggcag |
18385554 |
T |
|
| Q |
114 |
accttttctggccactgcacaggcacgaattaacttagaatataaggagattatgct |
170 |
Q |
| |
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||||||| | ||||||||||| | ||||| ||||||||||| |||||||| ||||| |
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| T |
18385555 |
accttttttagccactgcacaaacccgaatcaacttagaatacaaggagatcatgct |
18385611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 25232862 - 25232726
Alignment:
| Q |
28 |
aatgtgaaggttgtagtagaagactacgagttcttagaaaacatagtagtgatgaacgtacctaattgtccagtcactttgggtagaccttttctggcca |
127 |
Q |
| |
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|||||| |||||| ||||||||||| | | ||||| || |||||||||| || || ||||| |||||||||||| | |||| |||||||| |||||| |
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| T |
25232862 |
aatgtgcaggttgcagtagaagacttcaaattcttggaggacatagtagtattggacatacctgattgtccagtcattatgggcagacctttcttggcca |
25232763 |
T |
|
| Q |
128 |
ctgcacaggcacgaattaacttagaatataaggagat |
164 |
Q |
| |
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||| ||| || ||||| ||||||||||| |||||||| |
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| T |
25232762 |
ctgtacatgcccgaatcaacttagaatacaaggagat |
25232726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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