View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0396_high_1 (Length: 442)
Name: NF0396_high_1
Description: NF0396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0396_high_1 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: scaffold0728 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 28 - 429
Target Start/End: Original strand, 2491 - 2890
Alignment:
| Q |
28 |
cacaagtgactcatgtccttgaacattccaatcattggcacaagcactacatgtcacactgactcaaatgacttcacattgactcagcagtatttctatt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2491 |
cacaagtgactcatgtccttgaacattccaatcattggcacacgcactacatgtcacactgactcaaatgacttcacattgactcagcagtatttctatt |
2590 |
T |
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| Q |
128 |
tcaacattccaannnnnnnngcatataaattcccctgaaattttggtacatttccatttccatttcaatttctgaactataaaacattactctcttgctc |
227 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591 |
tcatcattccaattttttttgcatataaattcccctgaaattttggtacatttccatttccatttcaatttctgaactataaaacattactctcttgctc |
2690 |
T |
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| Q |
228 |
tcatgtttcatcactatcatcgtccgagattcaaacctaacccttctctctttcacatctcattgtttcatacacttcttactccgatcatagttctttc |
327 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2691 |
tcatgtttcatcactactatcgtccgagatttaaacctaacccttctctctttcacatctcattgtttcatacacttcttactccgatcatagttctttc |
2790 |
T |
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| Q |
328 |
ggttttctaagacgatcgttatcttctacaccggttaccggtaacaatcactcatactttgatcannnnnnnnagtcttaattctgttgatgaatgatga |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2791 |
ggttttctaagacgatcgttatcttctacaccggttaccggtaacaatcactcatactttgatcattttttt--gtcttaattctgttgatgaatgatga |
2888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 28 - 429
Target Start/End: Original strand, 19406925 - 19407324
Alignment:
| Q |
28 |
cacaagtgactcatgtccttgaacattccaatcattggcacaagcactacatgtcacactgactcaaatgacttcacattgactcagcagtatttctatt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19406925 |
cacaagtgactcatgtccttgaacattccaatcattggcacacgcactacatgtcacactgactcaaatgacttcacattgactcagcagtatttctatt |
19407024 |
T |
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| Q |
128 |
tcaacattccaannnnnnnngcatataaattcccctgaaattttggtacatttccatttccatttcaatttctgaactataaaacattactctcttgctc |
227 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19407025 |
tcatcattccaattttttttgcatataaattcccctgaaattttggtacatttccatttccatttcaatttctgaactataaaacattactctcttgctc |
19407124 |
T |
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| Q |
228 |
tcatgtttcatcactatcatcgtccgagattcaaacctaacccttctctctttcacatctcattgtttcatacacttcttactccgatcatagttctttc |
327 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19407125 |
tcatgtttcatcactactatcgtccgagatttaaacctaacccttctctctttcacatctcattgtttcatacacttcttactccgatcatagttctttc |
19407224 |
T |
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| Q |
328 |
ggttttctaagacgatcgttatcttctacaccggttaccggtaacaatcactcatactttgatcannnnnnnnagtcttaattctgttgatgaatgatga |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19407225 |
ggttttctaagacgatcgttatcttctacaccggttaccggtaacaatcactcatactttgatcattttttt--gtcttaattctgttgatgaatgatga |
19407322 |
T |
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