View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0396_high_2 (Length: 389)
Name: NF0396_high_2
Description: NF0396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0396_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 29785398 - 29785689
Alignment:
| Q |
1 |
tcctaacaacattttctacaaccaagctgtgactgtccccaccccaaacaaacttcatcccatttgctattaattcattcatttgggccacaatgtggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29785398 |
tcctaacaacattttctacaaccaagctgtgactgtccccaccccaaacaaacttcatcccatttgctattaattcattcatttgggccacaatgtggtc |
29785497 |
T |
|
| Q |
101 |
catcaaacatgaaccctcttgaacaaagatgggccttctgtgggtcccactgcacatcttgaagtaattctctgatccatcatagccaacaacttccaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29785498 |
catcaaacatgaaccctcttgaacaaagaagggccttctgtgggtcccactgcacatcttgaagtaattctctgatccatcatagccaacaacttccaat |
29785597 |
T |
|
| Q |
201 |
agtgcagcattaacacaatcaaatacaagtttctgatttgacctcattttccttctcttggcctcattaagaggctgagtactgtccttgtt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29785598 |
agtgcagcattaacacaatcaaatacaagtttctgatttgacctcattttccttctcttggcctcattaagaggctgagtactgtccttgtt |
29785689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1413 times since January 2019
Visitors: 3084