View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0396_high_3 (Length: 341)
Name: NF0396_high_3
Description: NF0396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0396_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 338
Target Start/End: Complemental strand, 42116618 - 42116309
Alignment:
| Q |
29 |
aaaagtgccacttaatttactttatatataagtagatttgttaaacaaagttttttatcaacgctaccaaccagttggtgtgatgatatctccaatatgt |
128 |
Q |
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| T |
42116618 |
aaaagtgccacttaatttactttatatataagtagatttgttaaacaaagttttttatcaacgctaccaaccagttggtgtgatgatatctccaatatgt |
42116519 |
T |
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| Q |
129 |
atgcattttagttagaattagatgatttatttatttttaataataaaatcagatgaaacttttgcatcaagtttagtgatgaaatgaaatcttatgatag |
228 |
Q |
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| T |
42116518 |
atgcattttagttagaattagatgatttatttatttttaataataaaatcagatgaaacttttgcatcaagtttagtgatgaaatgaaatcttatgataa |
42116419 |
T |
|
| Q |
229 |
gcaatctcaactgaaaaagtaaatcaaggtggttgttacacgtgcattgactgtttcataatgttacaacaatattccatgtattatgatcatgttacct |
328 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42116418 |
gcagtctcaactgaaaaagtaaatcaaggtggttgttacacgtgcattgactgtttcataatgttacaacaatattccatgtattatgatcatgttacct |
42116319 |
T |
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| Q |
329 |
ttgctactcc |
338 |
Q |
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| ||| |||| |
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| T |
42116318 |
tagcttctcc |
42116309 |
T |
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