View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0396_high_4 (Length: 315)

Name: NF0396_high_4
Description: NF0396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0396_high_4
NF0396_high_4
[»] chr2 (5 HSPs)
chr2 (30-256)||(17102673-17102899)
chr2 (30-256)||(32019407-32019633)
chr2 (109-148)||(20471194-20471233)
chr2 (99-158)||(13221835-13221894)
chr2 (112-146)||(27072383-27072417)
[»] chr6 (5 HSPs)
chr6 (30-256)||(33132180-33132406)
chr6 (30-255)||(17812181-17812406)
chr6 (195-230)||(34757215-34757250)
chr6 (112-147)||(21698731-21698766)
chr6 (112-147)||(30063676-30063711)
[»] chr7 (14 HSPs)
chr7 (30-255)||(6621260-6621485)
chr7 (30-256)||(15846813-15847039)
chr7 (30-256)||(15856023-15856249)
chr7 (33-255)||(36307943-36308158)
chr7 (30-256)||(21103502-21103727)
chr7 (138-256)||(11911422-11911540)
chr7 (153-256)||(44094832-44094936)
chr7 (94-147)||(2175097-2175150)
chr7 (94-155)||(39970000-39970061)
chr7 (112-148)||(21824398-21824434)
chr7 (112-143)||(665004-665035)
chr7 (93-136)||(42510141-42510184)
chr7 (112-169)||(5086616-5086673)
chr7 (100-144)||(27458138-27458182)
[»] chr1 (9 HSPs)
chr1 (30-256)||(17431102-17431328)
chr1 (30-256)||(44002185-44002411)
chr1 (30-256)||(3322042-3322268)
chr1 (94-147)||(18984745-18984798)
chr1 (112-147)||(4179992-4180027)
chr1 (88-131)||(26333728-26333771)
chr1 (112-169)||(27527316-27527373)
chr1 (112-148)||(22161772-22161808)
chr1 (100-148)||(24427587-24427635)
[»] chr5 (5 HSPs)
chr5 (30-256)||(11123536-11123762)
chr5 (100-147)||(19237666-19237713)
chr5 (112-147)||(19609166-19609201)
chr5 (112-146)||(36961986-36962020)
chr5 (112-146)||(42765300-42765334)
[»] chr8 (4 HSPs)
chr8 (30-252)||(14848322-14848544)
chr8 (91-180)||(15950370-15950459)
chr8 (123-169)||(10260509-10260555)
chr8 (112-148)||(28161966-28162002)
[»] chr4 (6 HSPs)
chr4 (30-247)||(12601768-12601995)
chr4 (123-256)||(16549376-16549509)
chr4 (37-172)||(38768701-38768836)
chr4 (112-169)||(15065926-15065983)
chr4 (112-147)||(4946703-4946738)
chr4 (112-148)||(6540593-6540629)
[»] chr3 (8 HSPs)
chr3 (30-247)||(35326975-35327191)
chr3 (37-169)||(10980952-10981084)
chr3 (195-255)||(32922727-32922787)
chr3 (112-148)||(2439511-2439547)
chr3 (99-167)||(19792286-19792354)
chr3 (112-169)||(2651796-2651853)
chr3 (99-143)||(634889-634933)
chr3 (112-148)||(34935110-34935146)
[»] scaffold1689 (1 HSPs)
scaffold1689 (112-148)||(934-970)
[»] scaffold0114 (1 HSPs)
scaffold0114 (112-148)||(11542-11578)
[»] scaffold0445 (1 HSPs)
scaffold0445 (112-148)||(14033-14069)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 17102899 - 17102673
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17102899 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 17102800  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17102799 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 17102700  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    |||||||||||||||||||||||||||    
T  17102699 atgaaatgagataattatctttctgtc 17102673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 32019633 - 32019407
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32019633 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 32019534  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32019533 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatatccttatta 32019434  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    |||||||||||||||||||||||||||    
T  32019433 atgaaatgagataattatctttctgtc 32019407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 20471194 - 20471233
Alignment:
Q  109 gtagagtttattaggagacaagcaaatgaggttgctcata 148  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  20471194 gtagagtttattaggaggcaagcaaatgaggttgctcata 20471233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 13221835 - 13221894
Alignment:
Q  99 aaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctag 158  Q
    |||||| | ||||||||||| |  ||||||||||| |||||||||||||| |||||||||    
T  13221835 aaactctaaggtagagtttagtcagagacaagcaactgaggttgctcatacacttgctag 13221894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 27072383 - 27072417
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctca 146  Q
    |||||||||||||| ||||||||||||||||||||    
T  27072383 gagtttattaggaggcaagcaaatgaggttgctca 27072417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 33132406 - 33132180
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33132406 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 33132307  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33132306 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 33132207  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    |||||||||||||||||||||||||||    
T  33132206 atgaaatgagataattatctttctgtc 33132180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 17812181 - 17812406
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17812181 tagaaatgatgtatctgatttaggagctatcatcagagaatttaggactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 17812280  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17812281 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 17812380  T
Q  230 atgaaatgagataattatctttctgt 255  Q
    ||||||||||||||||||||||||||    
T  17812381 atgaaatgagataattatctttctgt 17812406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 34757250 - 34757215
Alignment:
Q  195 tgtattacctgattgtattcaagatgtccttattaa 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  34757250 tgtattacctgattgtattcaagatgtccttattaa 34757215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 21698731 - 21698766
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcat 147  Q
    |||||||||||||| |||||||||||||||||||||    
T  21698731 gagtttattaggaggcaagcaaatgaggttgctcat 21698766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 30063711 - 30063676
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcat 147  Q
    |||||||||||||| |||||||||||||||||||||    
T  30063711 gagtttattaggaggcaagcaaatgaggttgctcat 30063676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 6621485 - 6621260
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6621485 tagaaatgatgtatctgatttaggagctatcatcagagaatgtatgactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 6621386  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6621385 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 6621286  T
Q  230 atgaaatgagataattatctttctgt 255  Q
    ||||||||||||||||||||||||||    
T  6621285 atgaaatgagataattatctttctgt 6621260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 15847039 - 15846813
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15847039 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 15846940  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15846939 gcaaatgaggttgctcatagacttgctagggcggccacattttatactagtatccactatttcactgtattacctgattatattcaagatgtccttatta 15846840  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    |||||||||||||||||||||||||||    
T  15846839 atgaaatgagataattatctttctgtc 15846813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 15856249 - 15856023
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15856249 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 15856150  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15856149 gcaaatgaggttgctcatagacttgctagggcggccacattttatactagtatccactatttcactgtattacctgattatattcaagatgtccttatta 15856050  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    |||||||||||||||||||||||||||    
T  15856049 atgaaatgagataattatctttctgtc 15856023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 36307943 - 36308158
Alignment:
Q  33 aaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaagca 132  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||| |||||||||||||||||||||||    
T  36307943 aaatgatgtatctgatttaggagctatcatcagagaatgtaggactacattctcatcttttttcacaaac--aaggatagagtttattaggagacaagca 36308040  T
Q  133 aatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttattaatg 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||| ||||||||||||||||||||||||||||||    
T  36308041 aatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactattt-----tattatctgattgtattcaagatgtccttattaatg 36308135  T
Q  233 aaatgagataattatctttctgt 255  Q
    |||||||||||||||||||||||    
T  36308136 aaatgagataattatctttctgt 36308158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 21103727 - 21103502
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||| ||| ||||||||||| ||||| ||||| |||||||||||||||    
T  21103727 tagaaataatgtatctgatttaggagctatcatcagagaatctaggactactttctaatcctttttcacaaaatcaagagtagattttattaggagacaa 21103628  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||||||||||| || |||||| || |||||| |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  21103627 gcaaatgaggttgctcatagatttactagggtggtcacattatatgctagtatccaccttttcactgtattacctgattgtattcaagatgttcttatta 21103528  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    ||||||||||||| |||| ||||||||    
T  21103527 atgaaatgagatagttat-tttctgtc 21103502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 11911540 - 11911422
Alignment:
Q  138 ggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttattaatgaaatg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11911540 ggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactctattacctgattgtattcaagatgtccttattaatgaaatg 11911441  T
Q  238 agataattatctttctgtc 256  Q
    |||||||||||||||||||    
T  11911440 agataattatctttctgtc 11911422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 44094936 - 44094832
Alignment:
Q  153 tgctagggcggccacattttatgctagtatcc-actatttcactgtattacctgattgtattcaagatgtccttattaatgaaatgagataattatcttt 251  Q
    ||||| || |||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  44094936 tgctaaggtggccacattttatgttagtatcccactatttcactgtattacatgattgcattcaagatgtccttattaatgaaatgagatcattatcttt 44094837  T
Q  252 ctgtc 256  Q
    |||||    
T  44094836 ctgtc 44094832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 2175150 - 2175097
Alignment:
Q  94 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcat 147  Q
    ||||||||||| ||||| |||||||||  |||||||||| ||||||||||||||    
T  2175150 ttcacaaactctagggtggagtttattcagagacaagcagatgaggttgctcat 2175097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 39970000 - 39970061
Alignment:
Q  94 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgc 155  Q
    |||||||||||  |||| ||||||| |||| |||||||||||||||||||||| | ||||||    
T  39970000 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttgctcacacacttgc 39970061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 21824398 - 21824434
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcata 148  Q
    |||||||||||||| ||||||||||||||||||||||    
T  21824398 gagtttattaggaggcaagcaaatgaggttgctcata 21824434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 143
Target Start/End: Complemental strand, 665035 - 665004
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgc 143  Q
    ||||||||||||||||||||||||||||||||    
T  665035 gagtttattaggagacaagcaaatgaggttgc 665004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 42510184 - 42510141
Alignment:
Q  93 tttcacaaactcaagggtagagtttattaggagacaagcaaatg 136  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||    
T  42510184 tttcacaaactcaagggttgagtttattaggcgacaagcgaatg 42510141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 5086616 - 5086673
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 169  Q
    |||||||||||||| ||||| ||||||||||| ||||  || |||||||| |||||||    
T  5086616 gagtttattaggaggcaagcgaatgaggttgcacatactctagctagggcagccacat 5086673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 27458138 - 27458182
Alignment:
Q  100 aactcaagggtagagtttattaggagacaagcaaatgaggttgct 144  Q
    ||||| ||||| |||||||||||||||||||| || |||||||||    
T  27458138 aactctagggtggagtttattaggagacaagccaacgaggttgct 27458182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 17431102 - 17431328
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17431102 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 17431201  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17431202 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactatattacctgattgtattcaagatgtccttatta 17431301  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    |||||||||||||||||||||||||||    
T  17431302 atgaaatgagataattatctttctgtc 17431328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 44002185 - 44002411
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44002185 tagaaatgatgtatctgatttaggagctatcatcagagaatgtatgactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 44002284  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44002285 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 44002384  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    ||||||||||||||| |||||||||||    
T  44002385 atgaaatgagataatcatctttctgtc 44002411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 3322042 - 3322268
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3322042 tagaaatgatgtatctgatttatgagctatcatcagagaatgtaggactaccttctcatcttttttcacaaactcaaaggtagagtttattaggagacaa 3322141  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3322142 gaaaatgagattgctcatagacttgctagggcggccacattttatgctaatatccactattttactgtattacctgattgtattcaagatgtccttatta 3322241  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    ||||||||||| |||||||||||||||    
T  3322242 atgaaatgagagaattatctttctgtc 3322268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 18984798 - 18984745
Alignment:
Q  94 ttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcat 147  Q
    |||||||||||  |||| ||||||||| ||||||||||| ||||||||||||||    
T  18984798 ttcacaaactctcgggtggagtttattcggagacaagcagatgaggttgctcat 18984745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 4179992 - 4180027
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcat 147  Q
    |||||||||||||| |||||||||||||||||||||    
T  4179992 gagtttattaggaggcaagcaaatgaggttgctcat 4180027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 26333771 - 26333728
Alignment:
Q  88 tcttttttcacaaactcaagggtagagtttattaggagacaagc 131  Q
    |||| |||||||||||||||||| |||||||||||| |||||||    
T  26333771 tcttctttcacaaactcaagggttgagtttattaggcgacaagc 26333728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 27527316 - 27527373
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 169  Q
    |||||||||||||| ||||| ||||||||||| |||| ||| | |||||| |||||||    
T  27527316 gagtttattaggaggcaagcgaatgaggttgcacatacactagttagggcagccacat 27527373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 22161772 - 22161808
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcata 148  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  22161772 gagtttattaggaggcaagcgaatgaggttgctcata 22161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 24427635 - 24427587
Alignment:
Q  100 aactcaagggtagagtttattaggagacaagcaaatgaggttgctcata 148  Q
    ||||| ||||| |||||||||||| ||||||| |||||||| |||||||    
T  24427635 aactctagggtcgagtttattaggcgacaagccaatgaggtcgctcata 24427587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 11123536 - 11123762
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11123536 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 11123635  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11123636 gcaaatgaggttgttcatagtcttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 11123735  T
Q  230 atgaaatgagataattatctttctgtc 256  Q
    |||||||||||||||||||||||||||    
T  11123736 atgaaatgagataattatctttctgtc 11123762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 19237666 - 19237713
Alignment:
Q  100 aactcaagggtagagtttattaggagacaagcaaatgaggttgctcat 147  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  19237666 aactctagggtggagtttattaggcgacaagcaaatgaggttgctcat 19237713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 19609201 - 19609166
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcat 147  Q
    |||||||||||||| |||||||||||||||||||||    
T  19609201 gagtttattaggaggcaagcaaatgaggttgctcat 19609166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 36962020 - 36961986
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctca 146  Q
    |||||||||||||| ||||||||||||||||||||    
T  36962020 gagtttattaggaggcaagcaaatgaggttgctca 36961986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 42765300 - 42765334
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctca 146  Q
    |||||||||||||| ||||||||||||||||||||    
T  42765300 gagtttattaggaggcaagcaaatgaggttgctca 42765334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 14848544 - 14848322
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14848544 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 14848445  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14848444 gcaaatgaggttgctcatagacttgctagggcggctacattttatgctagtatccactatttcactgtattacctgattgtattcaagatatccttatta 14848345  T
Q  230 atgaaatgagataattatctttc 252  Q
    |||||||||||||||||||||||    
T  14848344 atgaaatgagataattatctttc 14848322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 15950459 - 15950370
Alignment:
Q  91 tttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacattttatgctagt 180  Q
    ||||| |||||||| | ||| |||||||||| ||||||| | ||||| |||| |||||| ||| |||||||| | ||| |||||||||||    
T  15950459 ttttttacaaactcgaaggtggagtttattaagagacaacccaatgaagttgatcatagtcttcctagggcgactacagtttatgctagt 15950370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 10260509 - 10260555
Alignment:
Q  123 gagacaagcaaatgaggttgctcatagacttgctagggcggccacat 169  Q
    |||||||||||||||||| || |||||| |||||| |||||||||||    
T  10260509 gagacaagcaaatgaggtagcccatagatttgctaaggcggccacat 10260555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 28162002 - 28161966
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcata 148  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  28162002 gagtttattaggaggcaagcaaatgaggttgcacata 28161966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 12601995 - 12601768
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  12601995 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggactaccttcgcatcctttttcacaaactcaagggtagagtttattaggagacaa 12601896  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcac----------tgtattacctgattgtattcaagat 219  Q
    |||||| |||||||||||||||||  || || ||||||||| |||||||||||||||  ||||||          |||||||||||||||||||||||||    
T  12601895 gcaaataaggttgctcatagacttcataaggtggccacattatatgctagtatccaccttttcacaccttttcattgtattacctgattgtattcaagat 12601796  T
Q  220 gtccttattaatgaaatgagataattat 247  Q
    || |||||||||||||||||||| ||||    
T  12601795 gttcttattaatgaaatgagatagttat 12601768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 123 - 256
Target Start/End: Original strand, 16549376 - 16549509
Alignment:
Q  123 gagacaagcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtc 222  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16549376 gagacaagcaaatgaggttgctcatagacttgctagggtggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtc 16549475  T
Q  223 cttattaatgaaatgagataattatctttctgtc 256  Q
    ||||||||||||||||||||||||||||||||||    
T  16549476 cttattaatgaaatgagataattatctttctgtc 16549509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 38768836 - 38768701
Alignment:
Q  37 gatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatg 136  Q
    |||| ||||||| | ||||||||||||||||||||| |     | ||||| |||||||| ||||||||   ||| ||||||||||||||||| |||||||    
T  38768836 gatgaatctgatattggagctatcatcagagaatgtcgttgatcattctcgtctttttttacaaactccgaggttgagtttattaggagacaggcaaatg 38768737  T
Q  137 aggttgctcatagacttgctagggcggccacatttt 172  Q
    |  ||||||||||  | ||||||| |||||||||||    
T  38768736 atattgctcatagtttagctagggtggccacatttt 38768701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 15065926 - 15065983
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 169  Q
    |||||||||||||| ||||| ||||||||||| |||| ||| |||||||| |||||||    
T  15065926 gagtttattaggaggcaagcgaatgaggttgcacatacactagctagggcagccacat 15065983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 4946738 - 4946703
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcat 147  Q
    |||||||||||||| |||||||||||||||||||||    
T  4946738 gagtttattaggaggcaagcaaatgaggttgctcat 4946703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 6540593 - 6540629
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcata 148  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  6540593 gagtttattaggagacaagtaaatgaggttactcata 6540629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 35326975 - 35327191
Alignment:
Q  30 tagaaatgatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaa 129  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||| ||||    
T  35326975 tagaaatgatgtatctgatttaggagctattatcagagaatgtaggaatactttctcatcatttttcacaaactcaagg-tagagtttattaggaaacaa 35327073  T
Q  130 gcaaatgaggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttatta 229  Q
    || || ||||||||||||||||||||||||||||||  ||||||||||||||| |||   |||| |||||||||||||| |||| |||||||  ||||||    
T  35327074 gctaacgaggttgctcatagacttgctagggcggccggattttatgctagtattcaccggttcattgtattacctgattatatttaagatgtttttatta 35327173  T
Q  230 atgaaatgagataattat 247  Q
    || ||||| |||| ||||    
T  35327174 attaaatgggatagttat 35327191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 10981084 - 10980952
Alignment:
Q  37 gatgtatctgatttaggagctatcatcagagaatgtaggaataccttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatg 136  Q
    |||| ||||||||| ||||| || || ||||| ||||| ||| | |||||||||||||||||||||||   ||| |||||||||||||||||| |||||     
T  10981084 gatgaatctgattttggagcaattattagagagtgtagaaattcattctcatcttttttcacaaactcgcaggttgagtttattaggagacaaacaaata 10980985  T
Q  137 aggttgctcatagacttgctagggcggccacat 169  Q
    ||||||||||||| |||||||||||||||||||    
T  10980984 aggttgctcatagtcttgctagggcggccacat 10980952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 32922727 - 32922787
Alignment:
Q  195 tgtattacctgattgtattcaagatgtccttattaatgaaatgagataattatctttctgt 255  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  32922727 tgtattacctgattgtattcaagatgttcttattaatgaaatgagatagttatctttctgt 32922787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 2439511 - 2439547
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcata 148  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2439511 gagtttattaggaggcaagcaaatgaggttgctcata 2439547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 19792286 - 19792354
Alignment:
Q  99 aaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccac 167  Q
    |||||| | ||| ||||||| | ||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  19792286 aaactctaaggtggagtttaatcggagacaagcaaatgtggttgctcatacacttgctagagaggccac 19792354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 2651853 - 2651796
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 169  Q
    |||||||||||||| ||| | ||||||||||| |||| ||| |||||||| |||||||    
T  2651853 gagtttattaggaggcaaacgaatgaggttgcacatacactagctagggcagccacat 2651796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 634889 - 634933
Alignment:
Q  99 aaactcaagggtagagtttattaggagacaagcaaatgaggttgc 143  Q
    |||||| || ||||||||| || ||||||||||||||||||||||    
T  634889 aaactcgagtgtagagtttgttcggagacaagcaaatgaggttgc 634933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 34935110 - 34935146
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcata 148  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  34935110 gagtttattaggaggcaagcaaatgaggttgcacata 34935146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 934 - 970
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcata 148  Q
    |||||||||||||| ||||||||||||||||||||||    
T  934 gagtttattaggaggcaagcaaatgaggttgctcata 970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 11578 - 11542
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcata 148  Q
    |||||||||||||| ||||||||||||||||||||||    
T  11578 gagtttattaggaggcaagcaaatgaggttgctcata 11542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 14069 - 14033
Alignment:
Q  112 gagtttattaggagacaagcaaatgaggttgctcata 148  Q
    |||||||||||||| |||| |||||||||||||||||    
T  14069 gagtttattaggaggcaagaaaatgaggttgctcata 14033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 927 times since January 2019
Visitors: 3072