View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0396_low_3 (Length: 388)
Name: NF0396_low_3
Description: NF0396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0396_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 29785422 - 29785132
Alignment:
| Q |
1 |
ttggttgtagaaaatgttgttaggaaagaggttgtggagagtgggttggttgaggttatgagaatggagattgatgctttggggagggaaatagaaggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29785422 |
ttggttgtagaaaatgttgttaggaaagaggttgtggagagtgggttggttgaggttatgagaatggagattgatgctttggggagggaaatagaaggaa |
29785323 |
T |
|
| Q |
101 |
agattatagaagaactcgtcgagaatcttgtgctcgattttacaggcagatgagacgagggttttctcagtgttgtcaatcgcggatcgcagaatattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29785322 |
agattatagaagaactcgtcgagaatcttgtgctcgattttacaggcagatgagacgagggttttctcagtgttgtcaatcgcggatcgcagaatattat |
29785223 |
T |
|
| Q |
201 |
agttgtttgttcaaattctgctacacttatagcaccactatagccactatttcacgacacacggttttctgtttaatttaataaatattgt |
291 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29785222 |
agttgtttgttcaaattatgctacacttatagcaccactatagccactatttcacaacacacggttttctgtttaatttaataaatattgt |
29785132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 617 times since January 2019
Visitors: 3063