View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0397_high_3 (Length: 456)
Name: NF0397_high_3
Description: NF0397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0397_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 109 - 262
Target Start/End: Complemental strand, 41864843 - 41864690
Alignment:
| Q |
109 |
gcataaagtggaatcaaatgaagttgaatggcggggctaaggagcacaaaaaagagtgggtttgaataatttgtttacgaagaaacacaagcttggagcc |
208 |
Q |
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| T |
41864843 |
gcataaagtggaaacaaatgaagttgaatggcggggctaaggagcacaaaaaagagaggggctgaataatttgtttacgaagaaacacaagcttggaacc |
41864744 |
T |
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| Q |
209 |
accaacttgaaccatccccttttggaagcaatatagttgagttcatttattgag |
262 |
Q |
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| T |
41864743 |
accaacttgaaccatccccttttggaagcaatatagttgagttcatttattgag |
41864690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 301 - 443
Target Start/End: Complemental strand, 41864624 - 41864482
Alignment:
| Q |
301 |
ataaagaacccttcgtatgaatgttaactcttcatatctgtgtgctttctctttgcatcggtttgttttgttttctcaagaattttctccttacatgttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41864624 |
ataaagaacccttcgtatgaatgttaactcttcatatctgtgtgctttctgtttgtatcggtttgttttgttttctcaagaattttctccttacatgttt |
41864525 |
T |
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| Q |
401 |
tacattagtttattgtagcttttgtgataattcttcttcccct |
443 |
Q |
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| T |
41864524 |
tacattagttcattgtagcttttgtgataattcttcttcccct |
41864482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 26451950 - 26451987
Alignment:
| Q |
109 |
gcataaagtggaatcaaatgaagttgaatggcggggct |
146 |
Q |
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| T |
26451950 |
gcataaagtggaatcaaatgaagttgaatggcggggct |
26451987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 13861395 - 13861358
Alignment:
| Q |
109 |
gcataaagtggaatcaaatgaagttgaatggcggggct |
146 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||||| |
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| T |
13861395 |
gcataaagtggaaccaaatgaagttgaatggtggggct |
13861358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 52526691 - 52526654
Alignment:
| Q |
109 |
gcataaagtggaatcaaatgaagttgaatggcggggct |
146 |
Q |
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||||||||||||| ||||||||||||||||| |||||| |
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| T |
52526691 |
gcataaagtggaaccaaatgaagttgaatggtggggct |
52526654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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