View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0397_low_2 (Length: 518)
Name: NF0397_low_2
Description: NF0397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0397_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 28 - 510
Target Start/End: Complemental strand, 56007179 - 56006695
Alignment:
| Q |
28 |
caaaaccacaagttaccacattagatcaaccatacaaagagtcaatttatccaacataaagttcagactgcttacttgcaattcagaaaactgtctttgg |
127 |
Q |
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| T |
56007179 |
caaaaccacaagttaccacattagatcaaccaaacaaagagtcaatatatccaacataaagttcagactgcttacttgcaattcagaaaactgtctttgg |
56007080 |
T |
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| Q |
128 |
taatcgcgaacaacgttagctgtagcgccattagctaagatgacttcctcaagttcttgaatggtttggctaagcttttcaacttcaagaatcttttggc |
227 |
Q |
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| T |
56007079 |
taatcgcgaacaacgttagctgtagcgccattagctaagatgacttcctcaagttcttgaatggtttggctaagcttttcaacttcaagaatcttttggc |
56006980 |
T |
|
| Q |
228 |
ggcgagatttctctaaaattttggtctcctcctgtttgtggtagttgtaaattggctaaaacattttcactttcactatagaaaccaaatatttatt--n |
325 |
Q |
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| T |
56006979 |
ggtgagatttctctaaaattttggtctcctcctgtttgtggtagttgtaaattggctaaaacattttcactttcactatagaaaccaaatatttattaaa |
56006880 |
T |
|
| Q |
326 |
nnnnnnnnggaaatacaaaatcttgcctggtagatatcaatctgtctctttaaatcaaaattttgattttgaacttcttcaattattagacccttctcta |
425 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
56006879 |
aaaaaaaaggaaacacaaaatcttgcctggtagatatcaatctgtctctttaaatcaaaattttgattttgaacttcttcaattattagagccttctcta |
56006780 |
T |
|
| Q |
426 |
gtgcactttgcaaaatcctctctgcatctagcaatgccttctctttcgactttttgagtcgttctaaagttttgttatattcttg |
510 |
Q |
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| T |
56006779 |
gtgcactttgcaaaatcctctctgcatctagcaatgccttctctttcgactttttgagtcgttctaaagttttgttatcttcttg |
56006695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 263
Target Start/End: Complemental strand, 9644272 - 9644109
Alignment:
| Q |
100 |
tacttgcaattcagaaaactgtctttggtaatcgcgaacaacgttagctgtagcgccattagctaagatgacttcctcaagttcttgaatggtttggcta |
199 |
Q |
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||||||||| ||||||| ||||| | |||||||||| | ||||| || || ||||| | |||||||| ||||||||||| ||||| ||||||||| |
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| T |
9644272 |
tacttgcaactcagaaatctgtcgcttataatcgcgaatgagattagcggtggctccatttgataagatgagctcctcaagttcatgaattgtttggcta |
9644173 |
T |
|
| Q |
200 |
agcttttcaacttcaagaatcttttggcggcgagatttctctaaaattttggtctcctcctgtt |
263 |
Q |
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|| || |||||||| | ||||||||| ||| | |||||| || |||||| |||||||||||| |
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| T |
9644172 |
agtttctcaacttccacaatcttttgacggtggcttttctccaagattttgttctcctcctgtt |
9644109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 349 - 503
Target Start/End: Complemental strand, 9644023 - 9643869
Alignment:
| Q |
349 |
tgcctggtagatatcaatctgtctctttaaatcaaaattttgattttgaacttcttcaattattagacccttctctagtgcactttgcaaaatcctctct |
448 |
Q |
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||||||| |||| || ||||||||||| || ||||| |||| ||| ||||||||||| | ||| | | | |||||| ||||||| |||||||||||| |
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| T |
9644023 |
tgcctggcagatctcgatctgtctcttcaagtcaaagttttcattctgaacttcttcgactatcaaagctctctctaatgcacttcttaaaatcctctct |
9643924 |
T |
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| Q |
449 |
gcatctagcaatgccttctctttcgactttttgagtcgttctaaagttttgttat |
503 |
Q |
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| T |
9643923 |
gcttcaagcaatgccaactctttcgactttgtcagccgttccaaagctttcttat |
9643869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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