View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0398_high_4 (Length: 416)

Name: NF0398_high_4
Description: NF0398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0398_high_4
NF0398_high_4
[»] chr7 (5 HSPs)
chr7 (29-416)||(22636143-22636526)
chr7 (61-153)||(22602904-22602996)
chr7 (367-409)||(34399877-34399919)
chr7 (82-135)||(21182671-21182724)
chr7 (206-238)||(22620567-22620599)
[»] chr1 (4 HSPs)
chr1 (342-401)||(6427361-6427420)
chr1 (323-390)||(19637760-19637827)
chr1 (334-399)||(264607-264672)
chr1 (342-390)||(7988451-7988499)
[»] chr3 (3 HSPs)
chr3 (92-146)||(25092476-25092530)
chr3 (342-395)||(11093581-11093634)
chr3 (342-399)||(16789023-16789080)
[»] scaffold0022 (1 HSPs)
scaffold0022 (342-395)||(99904-99957)
[»] scaffold0020 (1 HSPs)
scaffold0020 (342-399)||(137791-137848)
[»] chr5 (2 HSPs)
chr5 (342-391)||(28296339-28296388)
chr5 (342-394)||(38749559-38749611)
[»] chr2 (1 HSPs)
chr2 (329-390)||(31026693-31026754)
[»] chr6 (1 HSPs)
chr6 (342-394)||(9024172-9024224)
[»] chr4 (2 HSPs)
chr4 (116-156)||(4383652-4383692)
chr4 (86-162)||(24069707-24069783)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 29 - 416
Target Start/End: Original strand, 22636143 - 22636526
Alignment:
Q  29 acaatgttggttctaaagggctttacataaacagcatcagcatcaacaacaaggagggtgtgattagcaatgctaaagaacatctcatcattgagtgcag 128  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22636143 acaatgtttgttctgaagggctttacataaacagcatcagcatcaacaacaaggagggtgtgattagcaatgctaaagaacatctcatcattgagtgcag 22636242  T
Q  129 cattgattattcttaatagatatgtttttcctggtagaaccttgagcttaaaggtatctgcacaaatagaaaaatttaacaacttgattgaatgaaaata 228  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22636243 cattgattattcttagtagatatgtttttcctggcagaaccttgagcttaaaggtatctgcacaaatagaataatttaacaacttgattgaatgaaaata 22636342  T
Q  229 atcactaatatcatggttttttgaatggattatgtttgtgcttttctttcgaatgttcaacacagacatag--atatggacaccagatacaacactgaca 326  Q
    |||||||||   ||||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||    
T  22636343 atcactaat---atgg--ttttgaatggactatgtttgtgcttttctttcgaatgttcaacactgacatagatatatggacaccagacacaacactgaca 22636437  T
Q  327 catcgagaccaaaattaatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgttgaagactggtacctgt 416  Q
    |||||| |||| |||||| || | ||||  ||||||||  ||||||||| |||||||||||||||||| |||||| ||||||| ||||||    
T  22636438 catcgacaccataattaa-ttgataaaacaaaataattgaatgtaatcaaatgtgttggtgtcgtgtcggtgttggagactgggacctgt 22636526  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 22602996 - 22602904
Alignment:
Q  61 agcatcagcatcaacaacaaggagggtgtgattagcaatgctaaagaacatctcatcattgagtgcagcattgattattcttaatagatatgt 153  Q
    ||||||||| |||||||| |  | ||||||||| |||||||||||||| |  || ||||||||||| ||||||||||| |||| |||||||||    
T  22602996 agcatcagcttcaacaactattaaggtgtgatttgcaatgctaaagaagagttcttcattgagtgctgcattgattatccttagtagatatgt 22602904  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 34399919 - 34399877
Alignment:
Q  367 atgtaatcatatgtgttggtgtcgtgtcagtgttgaagactgg 409  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  34399919 atgtaatcatatgtgtgggtgtcgtgtcagtgttgaacactgg 34399877  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 21182724 - 21182671
Alignment:
Q  82 gagggtgtgattagcaatgctaaagaacatctcatcattgagtgcagcattgat 135  Q
    |||||||||||| |||| ||| ||||| | ||||||||| ||||||||||||||    
T  21182724 gagggtgtgatttgcaacgctgaagaataactcatcatttagtgcagcattgat 21182671  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 22620567 - 22620599
Alignment:
Q  206 aacaacttgattgaatgaaaataatcactaata 238  Q
    ||||||||||||||||||||||||||| |||||    
T  22620567 aacaacttgattgaatgaaaataatcagtaata 22620599  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 6427361 - 6427420
Alignment:
Q  342 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgttg 401  Q
    |||||| | ||||| | ||||||| ||||||| |||||||||||||||||||||| ||||    
T  6427361 taatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtcagggttg 6427420  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 19637760 - 19637827
Alignment:
Q  323 gacacatcgagaccaaaattaatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcg 390  Q
    |||||||||| ||| | | |||||||| ||||||| || |||| |||||||||||||||| |||||||    
T  19637760 gacacatcgacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcg 19637827  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 264607 - 264672
Alignment:
Q  334 accaaaattaatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgt 399  Q
    ||||| |||||||||| ||| | | ||| ||  ||||||||| |||||||||||||||||||||||    
T  264607 accaatattaatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcgtgtcagtgt 264672  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 7988499 - 7988451
Alignment:
Q  342 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcg 390  Q
    |||||||| ||| ||| ||||||| ||||||||||| ||||||||||||    
T  7988499 taatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcg 7988451  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 25092530 - 25092476
Alignment:
Q  92 ttagcaatgctaaagaacatctcatcattgagtgcagcattgattattcttaata 146  Q
    ||||||||  ||||||| | ||| |||||||||||||||||||| ||||||||||    
T  25092530 ttagcaattttaaagaaaagctcttcattgagtgcagcattgatgattcttaata 25092476  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 11093581 - 11093634
Alignment:
Q  342 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtca 395  Q
    |||||| | ||||||| ||||||| | ||||||| |||||||||||||||||||    
T  11093581 taatttgaaaaaatgacataattcaaagtaatcagatgtgttggtgtcgtgtca 11093634  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 16789023 - 16789080
Alignment:
Q  342 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgt 399  Q
    |||||||| ||||| | |||||||  |||||| ||| |||||||||||||||||||||    
T  16789023 taatttaaaaaaatcatataattcagtgtaattataagtgttggtgtcgtgtcagtgt 16789080  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 99904 - 99957
Alignment:
Q  342 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtca 395  Q
    |||||| | ||||| | ||||||| ||||||| |||||||||||||||||||||    
T  99904 taattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtca 99957  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 137791 - 137848
Alignment:
Q  342 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtcagtgt 399  Q
    |||||||| ||||| | | |||||  |||| |||||||||||||||||||||||||||    
T  137791 taatttaagaaaatcacacaattcagtgtagtcatatgtgttggtgtcgtgtcagtgt 137848  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 28296339 - 28296388
Alignment:
Q  342 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgt 391  Q
    |||||| | ||||||| ||||||| ||||| |||||||||||||||||||    
T  28296339 taatttgagaaaatgacataattcaatgtactcatatgtgttggtgtcgt 28296388  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 38749611 - 38749559
Alignment:
Q  342 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtc 394  Q
    |||||| | ||||||| ||||||| ||||||| |||||||||||||| |||||    
T  38749611 taatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtc 38749559  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 31026693 - 31026754
Alignment:
Q  329 tcgagaccaaaattaatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcg 390  Q
    |||||||| | | |||||||| ||||||| ||||||| |||||||||||| ||| |||||||    
T  31026693 tcgagaccgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtcg 31026754  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 9024224 - 9024172
Alignment:
Q  342 taatttaacaaaatgaaataattccatgtaatcatatgtgttggtgtcgtgtc 394  Q
    |||||| | ||||||| ||||||| ||||||||||||||||  ||||||||||    
T  9024224 taatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtc 9024172  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 4383692 - 4383652
Alignment:
Q  116 tcattgagtgcagcattgattattcttaatagatatgtttt 156  Q
    |||||||||||||||||||| ||||||| |||||| |||||    
T  4383692 tcattgagtgcagcattgatgattcttagtagataggtttt 4383652  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 24069707 - 24069783
Alignment:
Q  86 gtgtgattagcaatgctaaagaacatctcatcattgagtgcagcattgattattcttaatagatatgtttttcctgg 162  Q
    ||||||||||||||||| || || |  || |||||||||||||| |||||||  | || || |||||||||||||||    
T  24069707 gtgtgattagcaatgctgaaaaagagttcgtcattgagtgcagcgttgattaaacgtagtaaatatgtttttcctgg 24069783  T

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