View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0398_high_5 (Length: 405)
Name: NF0398_high_5
Description: NF0398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0398_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 28 - 405
Target Start/End: Original strand, 38943605 - 38943982
Alignment:
| Q |
28 |
caaaacccaaactagtttgacctcagctaaaacattacaagcatctcactttttgatgtaaaaataaataaaattctgcttgctttaactgttacctatg |
127 |
Q |
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| T |
38943605 |
caaaacccaaactagtttgacctcagctaaaacattacaagcatctcactttttgatgtaaaaataaataaaattctgcttgctttaactgttacctatg |
38943704 |
T |
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| Q |
128 |
gactaatcgttgatgaacatagccaaatcttacagtattgtagggcaaggtaaccatgtctaccatagcaatattctgaacacaataaaatcaaaagcgt |
227 |
Q |
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| T |
38943705 |
gactaatcgttgatgaacatagccaaatcttacagtattgtagggcaaggtaaccatgtctaccatagcaatattctgaacacaataaaatcaaaagcgt |
38943804 |
T |
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| Q |
228 |
gcgtattaattgcagtgccttctcctggatattcaaatctcaataccatgaaagtattctagtcaggcggtgtaccgccaccactcacatttcatactcc |
327 |
Q |
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| T |
38943805 |
gcgtattaattgcagtgccttctcctggatattcaaatctcaataccatgaaagtattctagtcaggcggtgtaccgccaccactcacatttcatactcc |
38943904 |
T |
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| Q |
328 |
atgaatcgctaaaccaatactatgaactagtgcgagttgactgctgaccaatagcatatggagagaggaaattggaaa |
405 |
Q |
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| T |
38943905 |
atgaatcgctaaaccaatactatgaactagtgcgagttgactgctgaccaatagcatatggagagaggaaattggaaa |
38943982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 46941596 - 46941485
Alignment:
| Q |
177 |
gtaaccatgtctaccatagcaatattctgaacaca--ataaaatcaaaagcgtgcgtattaattgcagtgccttctcctggatattcaaatctcaatacc |
274 |
Q |
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||||||||||||||||||| |||||||||||||| | |||||||||| ||| | |||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
46941596 |
gtaaccatgtctaccatagacatattctgaacacagaacaaaatcaaaa-cgtacatattaattgcagtgccctcttctggatattcaaatctcaatacc |
46941498 |
T |
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| Q |
275 |
atgaaagtattct |
287 |
Q |
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| T |
46941497 |
ataaaagtattct |
46941485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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