View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0398_high_6 (Length: 369)
Name: NF0398_high_6
Description: NF0398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0398_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 42848651 - 42849007
Alignment:
| Q |
1 |
taattttaattttaactactcaagatttatgatactagaagtaaatttcaaagactattattctgtttgacgattttttcgactcatattttaggaggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42848651 |
taattttaattttaactactcaagatttatgataatagaagtaaatttcaaagactattattctgtttgatgattttttcgactcatattttaggaggac |
42848750 |
T |
|
| Q |
101 |
tacatgaatttggatacaccagagtcatttaactagtagctatgcttggccgttctgaagctcacaaagatgcaagcaccactgtaacgcatttactcta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42848751 |
tacatgaatttggatacaccggagtcatttaactagtagctatgcttggccgttctgaagctcacaaagatgcaagcaccactgtaacacatttactcta |
42848850 |
T |
|
| Q |
201 |
ttttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgcattctctatggatataacttga |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42848851 |
ttttctgtttctgcatatttttgactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgcattctctatggatataactt-a |
42848949 |
T |
|
| Q |
301 |
ttaggcttataattctttcccttctttactaggaattgtcaattcattgcgtgtctct |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42848950 |
ttaggcttataattctttcccttctttactaggaattgtcaattcattgcgtgtctct |
42849007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 183 - 356
Target Start/End: Original strand, 42855475 - 42855648
Alignment:
| Q |
183 |
tgtaacgcatttactct-attttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgcatt |
281 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||| ||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42855475 |
tgtaacgcatt-actcttattttctgtttctgcatatttttcactctcccattaggtgaatttcaggccattgctgttgtgaaacctctattcttgcatt |
42855573 |
T |
|
| Q |
282 |
ctctatggatataacttgattaggcttataattctttcccttctttactaggaattgtcaattcattgcgtgtct |
356 |
Q |
| |
|
| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42855574 |
ccccaaagatataacttgattaggcttataactctttcccttctttactaggaattgtcaattcattgcgtgtct |
42855648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 42857084 - 42857164
Alignment:
| Q |
199 |
tattttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgca |
279 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42857084 |
tattttctgtttctgcatatttttcactctcccatttggtgaatttcaggccattgctgttgtgaaacctctattcttgca |
42857164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 42853303 - 42853435
Alignment:
| Q |
10 |
ttttaactactcaagatttatgatactagaagtaaatttcaaagactattattctgt------ttgacgattttttcgactcatattttaggaggactac |
103 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||| || |||| ||||| | ||||||||||||||| |
|
|
| T |
42853303 |
ttttaaatactcaagatgtatgattctagaagtaaatttcaaagacta-tattctgttgagtgttgacaatgttttggactcgtcttttaggaggactac |
42853401 |
T |
|
| Q |
104 |
atgaatttggatacac--cagagtcatttaacta |
135 |
Q |
| |
|
||||| |||||||||| ||||||| |||||||| |
|
|
| T |
42853402 |
atgaacttggatacactacagagtcgtttaacta |
42853435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 42857184 - 42857227
Alignment:
| Q |
316 |
tttcccttctttactaggaattgtcaattcattgcgtgtctctg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42857184 |
tttcccttctttactaggaattgtcaattcattgcgagtctctg |
42857227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 42856910 - 42856986
Alignment:
| Q |
47 |
ttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacaccagag |
124 |
Q |
| |
|
|||||||||| ||||| |||| ||| || ||||||||| | |||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
42856910 |
ttcaaagactgttattgtgtt-gacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagag |
42856986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 42860987 - 42861063
Alignment:
| Q |
47 |
ttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacaccagag |
124 |
Q |
| |
|
|||||||||| ||||| |||| ||| || ||||||||| | |||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
42860987 |
ttcaaagactgttattgtgtt-gacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagag |
42861063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 42861513 - 42861557
Alignment:
| Q |
305 |
gcttataattctttcccttctttactaggaattgtcaattcattg |
349 |
Q |
| |
|
|||||||| | |||||||||||||||||||| || |||||||||| |
|
|
| T |
42861513 |
gcttataactatttcccttctttactaggaactgacaattcattg |
42861557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1421 times since January 2019
Visitors: 3084