View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0398_low_1 (Length: 683)

Name: NF0398_low_1
Description: NF0398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0398_low_1
NF0398_low_1
[»] chr2 (1 HSPs)
chr2 (6-654)||(8018131-8018779)


Alignment Details
Target: chr2 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 6 - 654
Target Start/End: Original strand, 8018131 - 8018779
Alignment:
Q  6 agtagcaaaggtaaagcattcaaagaaagaatgaaaaagtaaatgtatgcatttgaagaagaaaaactagcataatagtatcatcagatcacttttgaag 105  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018131 agtagaaaaggtaaagcattcaaagaaagaatgaaaaggtaaatgtatgcatttgaagaagaaaaactagcataatagtatcatcagatcacttttgaag 8018230  T
Q  106 aaggttcaaaagtgagtgagtggggactattgcagtaatagctgtatgtagagagagagggtcccactgatcgagcattaacaatgagcgtaactaccac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018231 aaggttcaaaagtgagtgagtggggactattgcagtaatagctgtatgtagagagagagggtcccactgatcgagcattaacaatgagcgtaactaccac 8018330  T
Q  206 atttacactcatcaaatgcacttcacattctttcactacttttttgacaatacaagctagtttcacacgagtcacgcgtgtgagagacagcaatactatn 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8018331 atttacactcatcaaatgcacttcacattctttcactacttttttgacaatacaagctagtttcacacgagtcacgcgtgtgagagacagcaatactata 8018430  T
Q  306 nnnnnnngacatgtttgtgcgtgttgaaaaggtttgtgttttgtgttgttggcgctaactcatttggcagttggttagatggagacatttattactatgg 405  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018431 aaaaaaagacatgtttgtgcgtgttgaaaaggtttgtgttttgtgttgttggcgctaactcatttggcagttggttagatggagacatttattactatgg 8018530  T
Q  406 tcagttttttggatatgtttttattttggaagttcaatagaggtgttactcctaccagtttggtttatttatcacactcatgcatttaattcaagagaag 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018531 tcagttttttggatatgtttttattttggaagttcaatagaggtgttactcctaccagtttggtttatttatcacactcatgcatttaattcaagagaag 8018630  T
Q  506 aggtaggagtannnnnnnnggttaatattaacctattttaagtatggtgaaatatattttatacaaaccttgtttatcacttcccattaatatattgttg 605  Q
    |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018631 aggtaggagtattttttttggttaatattaacctattttaagtatggtgaaatatattttatacaaaccttgtttatcacttcccattaatatattgttg 8018730  T
Q  606 tttgtttttgttgaaagaatgactactactagtacatttttgttgctta 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018731 tttgtttttgttgaaagaatgactactactagtacatttttgttgctta 8018779  T

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