View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0398_low_10 (Length: 303)

Name: NF0398_low_10
Description: NF0398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0398_low_10
NF0398_low_10
[»] chr4 (26 HSPs)
chr4 (61-228)||(34570108-34570286)
chr4 (157-228)||(48893444-48893515)
chr4 (162-228)||(56178442-56178508)
chr4 (167-228)||(48143344-48143405)
chr4 (157-228)||(26175437-26175509)
chr4 (157-228)||(45686988-45687059)
chr4 (157-228)||(52082464-52082535)
chr4 (162-228)||(52467163-52467230)
chr4 (162-228)||(47038222-47038288)
chr4 (171-228)||(29999644-29999701)
chr4 (157-226)||(54199709-54199778)
chr4 (157-228)||(9927259-9927331)
chr4 (157-228)||(12743729-12743801)
chr4 (157-228)||(36463197-36463268)
chr4 (157-228)||(52095163-52095234)
chr4 (157-228)||(5872113-5872182)
chr4 (157-228)||(12739354-12739426)
chr4 (163-228)||(37740921-37740987)
chr4 (171-228)||(5369897-5369954)
chr4 (157-226)||(4588249-4588319)
chr4 (157-228)||(46147196-46147268)
chr4 (169-223)||(5207664-5207717)
chr4 (157-228)||(29254789-29254860)
chr4 (157-228)||(31474442-31474511)
chr4 (177-228)||(13992112-13992163)
chr4 (162-228)||(37229535-37229600)
[»] chr2 (30 HSPs)
chr2 (157-228)||(24885881-24885952)
chr2 (157-228)||(723548-723619)
chr2 (157-228)||(2334219-2334290)
chr2 (157-228)||(34139574-34139645)
chr2 (157-228)||(36987876-36987947)
chr2 (157-227)||(42362642-42362712)
chr2 (164-228)||(38312536-38312600)
chr2 (169-228)||(14633641-14633700)
chr2 (157-228)||(33162255-33162326)
chr2 (157-228)||(6594805-6594876)
chr2 (157-228)||(17057170-17057241)
chr2 (157-228)||(17085153-17085224)
chr2 (157-228)||(36773854-36773925)
chr2 (157-224)||(11690787-11690855)
chr2 (171-228)||(36205480-36205537)
chr2 (174-228)||(5723074-5723128)
chr2 (165-228)||(11049841-11049903)
chr2 (162-204)||(26354129-26354170)
chr2 (175-228)||(4484147-4484200)
chr2 (175-228)||(4502952-4503005)
chr2 (175-228)||(45100050-45100103)
chr2 (157-228)||(29868164-29868236)
chr2 (162-228)||(11067596-11067663)
chr2 (175-226)||(30833646-30833697)
chr2 (171-226)||(32289866-32289921)
chr2 (162-204)||(13122079-13122120)
chr2 (157-228)||(17489959-17490031)
chr2 (157-228)||(11151396-11151468)
chr2 (157-228)||(36317814-36317886)
chr2 (157-228)||(39285130-39285201)
[»] chr3 (38 HSPs)
chr3 (167-228)||(9581579-9581640)
chr3 (157-228)||(22834808-22834879)
chr3 (157-228)||(9666271-9666342)
chr3 (157-228)||(40734793-40734864)
chr3 (157-228)||(27305520-27305589)
chr3 (157-228)||(2074884-2074954)
chr3 (157-227)||(761141-761210)
chr3 (171-228)||(9635939-9635996)
chr3 (157-228)||(29196190-29196262)
chr3 (157-228)||(39153165-39153237)
chr3 (157-228)||(40735678-40735749)
chr3 (157-223)||(5236258-5236324)
chr3 (162-228)||(44700290-44700356)
chr3 (167-228)||(7764761-7764822)
chr3 (168-228)||(7762562-7762622)
chr3 (167-227)||(16499311-16499371)
chr3 (157-224)||(29813361-29813429)
chr3 (157-228)||(37406985-37407056)
chr3 (157-228)||(37408755-37408826)
chr3 (157-216)||(51399122-51399181)
chr3 (171-228)||(5257959-5258016)
chr3 (171-228)||(9634637-9634693)
chr3 (171-228)||(19683703-19683760)
chr3 (174-223)||(29682657-29682706)
chr3 (157-228)||(29811164-29811236)
chr3 (165-228)||(32891386-32891449)
chr3 (169-216)||(31314748-31314795)
chr3 (173-228)||(45095459-45095514)
chr3 (157-228)||(51351942-51352012)
chr3 (171-228)||(5260138-5260195)
chr3 (157-228)||(21350812-21350883)
chr3 (157-228)||(23391713-23391785)
chr3 (157-224)||(23410132-23410200)
chr3 (162-210)||(47304575-47304623)
chr3 (173-228)||(23197761-23197816)
chr3 (173-228)||(23199954-23200009)
chr3 (152-201)||(4160055-4160105)
chr3 (178-226)||(801388-801436)
[»] chr7 (36 HSPs)
chr7 (157-224)||(38671026-38671093)
chr7 (157-224)||(41648815-41648882)
chr7 (157-228)||(48489727-48489798)
chr7 (157-228)||(23555337-23555409)
chr7 (157-228)||(36146213-36146284)
chr7 (157-224)||(14069634-14069702)
chr7 (157-224)||(14379662-14379730)
chr7 (157-228)||(47675937-47676009)
chr7 (157-228)||(8153633-8153704)
chr7 (157-228)||(25616151-25616222)
chr7 (157-228)||(27348113-27348184)
chr7 (175-228)||(4179069-4179122)
chr7 (171-228)||(35854212-35854269)
chr7 (157-228)||(4586457-4586529)
chr7 (157-228)||(18126942-18127014)
chr7 (157-228)||(19502474-19502546)
chr7 (157-228)||(26417612-26417684)
chr7 (157-228)||(31732769-31732841)
chr7 (157-228)||(23344261-23344331)
chr7 (163-228)||(495795-495860)
chr7 (171-228)||(29991349-29991406)
chr7 (157-228)||(41317239-41317311)
chr7 (162-216)||(43864552-43864607)
chr7 (162-228)||(47673750-47673817)
chr7 (157-228)||(48491872-48491943)
chr7 (157-210)||(6430441-6430495)
chr7 (162-228)||(12096972-12097037)
chr7 (163-200)||(30024569-30024606)
chr7 (175-228)||(48409103-48409156)
chr7 (157-210)||(4510340-4510394)
chr7 (157-210)||(4512182-4512236)
chr7 (162-210)||(2360778-2360827)
chr7 (175-228)||(25766776-25766829)
chr7 (157-216)||(1113960-1114020)
chr7 (172-228)||(24525322-24525378)
chr7 (157-228)||(31105201-31105272)
[»] chr1 (33 HSPs)
chr1 (157-228)||(833971-834042)
chr1 (157-228)||(8550585-8550656)
chr1 (157-228)||(28265360-28265431)
chr1 (157-228)||(40122002-40122073)
chr1 (157-228)||(45644159-45644230)
chr1 (162-228)||(3189640-3189706)
chr1 (162-228)||(3198457-3198523)
chr1 (162-228)||(3207296-3207362)
chr1 (163-228)||(49918646-49918711)
chr1 (157-228)||(37559665-37559737)
chr1 (157-228)||(196711-196782)
chr1 (157-228)||(31659534-31659605)
chr1 (162-227)||(13659157-13659222)
chr1 (157-228)||(4552449-4552521)
chr1 (152-228)||(10925518-10925594)
chr1 (157-228)||(3846922-3846993)
chr1 (157-216)||(37503363-37503422)
chr1 (157-228)||(50166981-50167052)
chr1 (173-228)||(50169032-50169087)
chr1 (163-228)||(13137787-13137853)
chr1 (171-228)||(20762964-20763021)
chr1 (157-229)||(23555072-23555144)
chr1 (157-228)||(28220027-28220099)
chr1 (157-228)||(28223222-28223294)
chr1 (157-228)||(1833804-1833875)
chr1 (157-228)||(30476247-30476319)
chr1 (157-228)||(44455456-44455527)
chr1 (157-228)||(927786-927855)
chr1 (184-228)||(3157161-3157205)
chr1 (157-228)||(16455912-16455983)
chr1 (171-228)||(13316167-13316224)
chr1 (173-226)||(51765697-51765750)
chr1 (157-216)||(41361218-41361277)
[»] chr8 (32 HSPs)
chr8 (162-228)||(41366424-41366490)
chr8 (157-228)||(5689563-5689634)
chr8 (157-228)||(6599261-6599332)
chr8 (157-228)||(6674714-6674785)
chr8 (157-228)||(12702432-12702503)
chr8 (157-228)||(30143636-30143707)
chr8 (157-228)||(15213082-15213154)
chr8 (157-225)||(4731957-4732025)
chr8 (157-228)||(33352446-33352517)
chr8 (162-228)||(18105882-18105948)
chr8 (171-228)||(19945174-19945231)
chr8 (175-228)||(31218553-31218606)
chr8 (171-228)||(44304151-44304208)
chr8 (165-228)||(1746028-1746091)
chr8 (162-228)||(3303476-3303543)
chr8 (157-228)||(8154076-8154146)
chr8 (174-228)||(34254149-34254203)
chr8 (174-228)||(34256325-34256379)
chr8 (175-228)||(17982949-17983002)
chr8 (157-228)||(4734002-4734074)
chr8 (157-228)||(4743028-4743100)
chr8 (157-228)||(1345177-1345248)
chr8 (173-228)||(42498491-42498546)
chr8 (162-228)||(43036718-43036785)
chr8 (157-228)||(4162761-4162831)
chr8 (157-215)||(7493296-7493351)
chr8 (157-228)||(8965493-8965562)
chr8 (157-216)||(40321383-40321441)
chr8 (173-228)||(27811574-27811631)
chr8 (162-226)||(3073686-3073748)
chr8 (157-227)||(11711806-11711875)
chr8 (157-216)||(19491504-19491563)
[»] chr6 (22 HSPs)
chr6 (157-228)||(26954092-26954163)
chr6 (157-228)||(28137212-28137283)
chr6 (165-228)||(30834343-30834406)
chr6 (174-228)||(33160169-33160223)
chr6 (171-228)||(5408885-5408942)
chr6 (171-228)||(5413210-5413267)
chr6 (157-227)||(16569316-16569388)
chr6 (162-228)||(3038733-3038799)
chr6 (171-228)||(16452143-16452200)
chr6 (171-226)||(2171342-2171397)
chr6 (165-228)||(31404484-31404547)
chr6 (157-210)||(602904-602958)
chr6 (182-228)||(9182857-9182903)
chr6 (169-215)||(22963522-22963568)
chr6 (169-215)||(23824825-23824871)
chr6 (152-216)||(257241-257304)
chr6 (178-228)||(5406025-5406075)
chr6 (178-228)||(5410350-5410400)
chr6 (178-226)||(3072579-3072627)
chr6 (157-212)||(14521479-14521534)
chr6 (178-210)||(17763313-17763345)
chr6 (178-210)||(21589252-21589284)
[»] chr5 (25 HSPs)
chr5 (157-228)||(5887236-5887307)
chr5 (157-228)||(534054-534126)
chr5 (157-228)||(8565749-8565820)
chr5 (157-224)||(31183273-31183340)
chr5 (157-227)||(33831975-33832045)
chr5 (157-226)||(16649636-16649705)
chr5 (157-228)||(30682723-30682795)
chr5 (162-228)||(538316-538383)
chr5 (157-228)||(13240047-13240118)
chr5 (163-228)||(42428237-42428303)
chr5 (171-228)||(30182884-30182941)
chr5 (157-228)||(3075550-3075622)
chr5 (157-228)||(28750456-28750528)
chr5 (157-228)||(39468349-39468421)
chr5 (157-228)||(19806658-19806728)
chr5 (173-226)||(16409777-16409830)
chr5 (172-228)||(25413056-25413112)
chr5 (157-228)||(42426036-42426108)
chr5 (171-226)||(9789037-9789092)
chr5 (162-224)||(32637123-32637186)
chr5 (174-228)||(36073861-36073915)
chr5 (157-210)||(40147555-40147609)
chr5 (157-228)||(13488496-13488568)
chr5 (173-228)||(13343356-13343411)
chr5 (171-226)||(18441457-18441512)
[»] scaffold0006 (1 HSPs)
scaffold0006 (162-227)||(148918-148983)
[»] scaffold0066 (1 HSPs)
scaffold0066 (157-229)||(20217-20288)
[»] scaffold0286 (1 HSPs)
scaffold0286 (171-226)||(11864-11919)
[»] scaffold0002 (1 HSPs)
scaffold0002 (171-226)||(434832-434887)
[»] scaffold0491 (2 HSPs)
scaffold0491 (173-230)||(10976-11033)
scaffold0491 (173-230)||(8550-8607)
[»] scaffold1668 (1 HSPs)
scaffold1668 (157-228)||(1302-1374)
[»] scaffold0016 (1 HSPs)
scaffold0016 (173-228)||(114899-114955)
[»] scaffold1519 (1 HSPs)
scaffold1519 (171-230)||(1210-1269)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 61 - 228
Target Start/End: Original strand, 34570108 - 34570286
Alignment:
Q  61 agaggaaataaggacttgaagcattggatttacatcaattgcgttgaccat------------ttctgaacagtagcaatggttaagccacaaatgtaaa 148  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||||||||||||||||||    
T  34570108 agaggaaataaggactagaagcattggatttacatcaattgcgttgaccatgacataaatgatttctgaa-agtagcaatggttaagccacaaatgtaaa 34570206  T
Q  149 acaaaatggttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  34570207 acaaaattgttgcgaattcggattcaaaatcacaccaatataaactatgatgtgtggagcaaaggaaagtagtaaccaat 34570286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 48893444 - 48893515
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  48893444 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 48893515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 56178442 - 56178508
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  56178442 gaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 56178508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 48143405 - 48143344
Alignment:
Q  167 cggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  48143405 cggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 48143344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 26175437 - 26175509
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  26175437 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 26175509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 45686988 - 45687059
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||| |||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||||    
T  45686988 gttgtgaattcagactcaaaatcacaccaatacaaactatgatgtatggagcaaaggaaagtagtaaccaat 45687059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 52082464 - 52082535
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||| |||||||||||    
T  52082464 gttgtgaattcggactcaaaatcacaccaatacaaattatgatgtgtggaacaaaggaaagtagtaaccaat 52082535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 52467163 - 52467230
Alignment:
Q  162 gaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  52467163 gaattcggactcaaaactcacaccaatacaaactatgatgtgtgaagcaaaggaaagtggtaaccaat 52467230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 47038222 - 47038288
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||    
T  47038222 gaatttggactcaaaatcacaccaatacaaactatgatgtgtggaacaaaggaaagtagtaaccaat 47038288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 29999644 - 29999701
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  29999644 ctcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 29999701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 54199709 - 54199778
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||| || ||||||||||| |||||||||    
T  54199709 gttgtgaattcggactcaaaatcacaccaatacaaacgatgatgtatggagcaaaggaaagtagtaacca 54199778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 9927259 - 9927331
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  9927259 gttgtgaattcggactcaaaactcgcaccaatataaactatgatgtgtggagcaaaggaaagtagttaccaat 9927331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 12743729 - 12743801
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||| |||||||| |||||| ||||||||||| |||||||||||    
T  12743729 gttgtgaattcggactcaaaactcacaccaatacaaactatgttgtgtggagcaaaggaaagtagtaaccaat 12743801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 36463197 - 36463268
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||||| || |||||||| || ||||||||    
T  36463197 gttgtgaattcggactcaaaatcacactaatacaaactatgatgtgtggagtaaaggaaagtaataaccaat 36463268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 52095163 - 52095234
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||| |||||| ||||    
T  52095163 gttgtgaattcggactcaaaatcacaccaatacaaactatgacgtgtggaacaaaggaaagtagtaatcaat 52095234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 5872182 - 5872113
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||| |||||||||||||||||||||| ||||  ||||||||| ||||||||||| |||||||||||    
T  5872182 gttgtgaatccggactcaaaatcacaccaatacaaac--tgatgtgtggagcaaaggaaagtagtaaccaat 5872113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 12739354 - 12739426
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| || ||| |||| |||||||||||    
T  12739354 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagtaaaagaaagtagtaaccaat 12739426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 37740987 - 37740921
Alignment:
Q  163 aattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||| |||||| ||||    
T  37740987 aattcggactcaaaactcacaccaatacaaactatgatgtgtggagcacaggaaagtagtaatcaat 37740921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 5369897 - 5369954
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||| ||||||||||||||| || |||||||| |||||| ||||    
T  5369897 ctcaaaatcacaccaatacaaactatgatgtgtggagtaaaggaaagtagtaatcaat 5369954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 4588319 - 4588249
Alignment:
Q  157 gttgcgaattcggactcaaaa--tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||| ||||||||||||||||  ||||||||||| | ||| ||||||||| |||||||||||||||||||||    
T  4588319 gttgtgaattcggactcaaaaactcacaccaata-atactttgatgtgtggagcaaaggaaaatagtaacca 4588249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 46147196 - 46147268
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||| | ||||||| ||||||||||  ||||||||||||||| ||||||||||| |||||||||||    
T  46147196 gttgtgaattccgcctcaaaactcacaccaatgcaaactatgatgtgtggagcaaaggaaagtagtaaccaat 46147268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 5207664 - 5207717
Alignment:
Q  169 gactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaa 223  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||    
T  5207664 gactcaaaatcacaccaatataaa-tatggtgtgtggagcaaaggaaagtagtaa 5207717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 29254860 - 29254789
Alignment:
Q  157 gttgcgaattcgga-ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||| || |||||||||| |||| ||||||||||||||| |||||| |||| |||||||||||    
T  29254860 gttgtgaattcggaacttaaaatcacactaatacaaactatgatgtgtggagcaaa-gaaagtagtaaccaat 29254789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 31474511 - 31474442
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||  ||||||||||| |||| |||||||||| |||||| |||| |||||| ||||    
T  31474511 gttgtgaattcggactcaa--tcacaccaatacaaacaatgatgtgtgtagcaaatgaaagtagtaatcaat 31474442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 13992112 - 13992163
Alignment:
Q  177 atcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||  || ||||||||||| ||||||||||| |||||||||||    
T  13992112 atcacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccaat 13992163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 37229535 - 37229600
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||||| | ||||||| |||||||| |||||| ||||| || || |||||||||||    
T  37229535 gaattcggactcaaaataaaaccaata-aaactatgttgtgtggagcaatgggaagtagtaaccaat 37229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 24885952 - 24885881
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  24885952 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtgtagcaaaggaaaatagtaaccaat 24885881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 723548 - 723619
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  723548 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 723619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 2334219 - 2334290
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  2334219 gttgtgaattcagactcaaaatcacaccaatacaaactatgatgtgtgaagcaaaggaaagtagtaaccaat 2334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 34139574 - 34139645
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  34139574 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 34139645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 36987876 - 36987947
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  36987876 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 36987947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 42362712 - 42362642
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaa 227  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  42362712 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaa 42362642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 38312600 - 38312536
Alignment:
Q  164 attcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  38312600 attcggactcaaaatcacaccaatataaacaatgatgtgtggagcaaaggaaagtagtaaccaat 38312536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 14633641 - 14633700
Alignment:
Q  169 gactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  14633641 gactcaaaatcacaccaatacaaactatgatgtgtgaagcaaaggaaagtagtaaccaat 14633700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 33162255 - 33162326
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||    
T  33162255 gttgtgaattcggactcaaaatcacatcaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 33162326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 6594805 - 6594876
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||    
T  6594805 gttgtgaatttggactcaaaatcacaccaatacaaactatgatgtgtggagcaaagtaaagtagtaaccaat 6594876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 17057170 - 17057241
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||| |||||||||||    
T  17057170 gttgtgaattcggactcaaaatcacaccaatacaaaatatgatgtgtagagcaaaggaaagtagtaaccaat 17057241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 17085153 - 17085224
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||| |||||||||||    
T  17085153 gttgtgaattcggactcaaaatcacaccaatacaaaatatgatgtgtagagcaaaggaaagtagtaaccaat 17085224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 36773925 - 36773854
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||    
T  36773925 gttgtgaattcggattcaaaatcacaccaatacaaactatgatgtgtggagcaaatgaaagtagtaaccaat 36773854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 11690855 - 11690787
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaac 224  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  11690855 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaac 11690787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 36205480 - 36205537
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||    
T  36205480 ctcaaaatcacactaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 36205537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 5723074 - 5723128
Alignment:
Q  174 aaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||    
T  5723074 aaaatcacaccaatacaaactatgatgtgtggagcaaagtaaagtagtaaccaat 5723128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 11049903 - 11049841
Alignment:
Q  165 ttcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||| |||||||||||||||| ||||||||||| ||| |||||| |||| |||||||||||    
T  11049903 ttcggacgcaaaatcacaccaata-aaactatgatgcgtggagcaaaagaaagtagtaaccaat 11049841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 26354170 - 26354129
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtg 204  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  26354170 gaattcggactcaaaatcacaccaata-aaactatgatgtgtg 26354129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 4484147 - 4484200
Alignment:
Q  175 aaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||  || ||||||||||| ||||||||||| |||||||||||    
T  4484147 aaatcacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccaat 4484200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 4502952 - 4503005
Alignment:
Q  175 aaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||| ||||||| ||||||| || |||||||| |||||||||||    
T  4502952 aaatcacaccaatacaaactataatgtgtggagtaaaggaaagtagtaaccaat 4503005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 45100103 - 45100050
Alignment:
Q  175 aaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||  || ||||||||||| ||||||||||| |||||||||||    
T  45100103 aaatcacaccaatacgaattatgatgtgtggagcaaaggaaagtagtaaccaat 45100050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 29868236 - 29868164
Alignment:
Q  157 gttgcgaattcggactcaaaat-cacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||| | |||| ||||| ||||||||||||||| ||||||| ||| |||||| ||||    
T  29868236 gttgtgaattcggactcaaatttcacagcaatacaaactatgatgtgtggagcaaagaaaagtagtaatcaat 29868164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 11067663 - 11067596
Alignment:
Q  162 gaattcggactcaaaatcacaccaatat-aaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| | |||||||| |||||||  | ||||||||||||||| ||||||||||| |||||||||||    
T  11067663 gaattcagcctcaaaattacaccaaattcaaactatgatgtgtggagcaaaggaaagtagtaaccaat 11067596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 30833697 - 30833646
Alignment:
Q  175 aaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    ||||||||||||||  || ||||||||||| ||||||||||| |||||||||    
T  30833697 aaatcacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaacca 30833646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 32289921 - 32289866
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    ||||||| |||||||||| ||| || |||||||| ||||||||||| |||||||||    
T  32289921 ctcaaaaccacaccaatacaaagtaagatgtgtggagcaaaggaaagtagtaacca 32289866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 13122120 - 13122079
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtg 204  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  13122120 gaattcggacacaaaatcacaccaata-aaactatgatgtgtg 13122079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 17489959 - 17490031
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatga--tgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||||  |||||||| |||||||||  |||||| |||||  ||||||||||||||||    
T  17489959 gttgtgaattcggactcaaaattgcaccaata-aaactatgatgtgtgtggagcaagagaaaatagtaaccaat 17490031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 11151396 - 11151468
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| |||||||| ||| ||||||| ||||||||||||||| ||||||  ||| |||||| ||||    
T  11151396 gttgtgaattcgaactcaaaactcataccaatacaaactatgatgtgtggagcaaataaaagtagtaatcaat 11151468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 36317814 - 36317886
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||| |||||||||| ||||||||||| |||| |||||||||  | |||| |||| |||||||||||    
T  36317814 gttgtgaatttggactcaaaactcacaccaatacaaacaatgatgtgtagaacaaatgaaagtagtaaccaat 36317886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 39285201 - 39285130
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||| |||| ||| ||||||| || |||||||||||| ||||||| ||| |||||||||||    
T  39285201 gttgtgaattcggacttaaaactcataccaatacaa-ctatgatgtgtggagcaaagaaaagtagtaaccaat 39285130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 9581640 - 9581579
Alignment:
Q  167 cggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9581640 cggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaagtagtaaccaat 9581579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 22834808 - 22834879
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  22834808 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 22834879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 9666271 - 9666342
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||    
T  9666271 gttgtgaattcggactcaaaatcacaccaatacaaactatgatctgtggagcaaaggaaagtagtaaccaat 9666342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 40734864 - 40734793
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  40734864 gttgtgaattcggtctcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 40734793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 27305520 - 27305589
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||    
T  27305520 gttgtgaattcggactcaaaatcacaccaata--aactatgatgtgtggagcaaaggaaagtagtaaccaat 27305589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 2074884 - 2074954
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  2074884 gttgtgaattcggacccaaaatcacaccaata-aaactatgatgtgtggagcaaaggaaagtagtaaccaat 2074954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 761210 - 761141
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaa 227  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  761210 gttgtgaattcggactcaaa-tcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaa 761141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 9635939 - 9635996
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  9635939 ctcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 9635996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 29196190 - 29196262
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  29196190 gttgtgaattcggactcaaatctcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 29196262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 39153165 - 39153237
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  39153165 gttgagaattcgggctcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 39153237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 40735749 - 40735678
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||  ||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||    
T  40735749 gttgtgaattcggtatcaaaatcacaccaatacaaattatgatgtgtggagcaaaggaaagtagtaaccaat 40735678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 5236258 - 5236324
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaa 223  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| || | |||||| ||||||    
T  5236258 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagtacaggaaagtagtaa 5236324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 44700290 - 44700356
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||||||||||||||| |||||||||||  || ||||||| ||| |||||||||||    
T  44700290 gaattcggactcaaaatcacaccaatacaaactatgatgcatggagcaaagaaaagtagtaaccaat 44700356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 7764822 - 7764761
Alignment:
Q  167 cggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||  ||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  7764822 cggactcaaaactacaccaatacaaactatgatgtgtgaagtaaaggaaagtagtaaccaat 7764761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 7762622 - 7762562
Alignment:
Q  168 ggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||  ||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  7762622 ggactcaaaactacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 7762562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 16499371 - 16499311
Alignment:
Q  167 cggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaa 227  Q
    |||||||||||||||| ||||| ||||||| ||||||| ||||||||||| ||||||||||    
T  16499371 cggactcaaaatcacatcaatacaaactataatgtgtggagcaaaggaaagtagtaaccaa 16499311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 29813429 - 29813361
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaac 224  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||| |||||||    
T  29813429 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaagaaaagtagtaac 29813361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 37407056 - 37406985
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||| |||||| |||||||| || ||| ||||||||||| ||||||||||| |||||||||||    
T  37407056 gttgtgaattcggcctcaaagtcacaccactacaaaatatgatgtgtggagcaaaggaaagtagtaaccaat 37406985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 37408826 - 37408755
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||| |||||| ||||| ||||| ||| ||||||||||| ||||||||||| |||||||||||    
T  37408826 gttgtgaattcggcctcaaagtcacatcaatacaaaatatgatgtgtggagcaaaggaaagtagtaaccaat 37408755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 51399181 - 51399122
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaa 216  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||| || |||||||||||    
T  51399181 gttgtgaattcggactcaaaatcataccaatacaaactatgatgtatggagcaaaggaaa 51399122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 5257959 - 5258016
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| |||||||||||  |||||||||||||| ||||||||||| |||||||||||    
T  5257959 ctcaaagtcacaccaatacgaactatgatgtgtggagcaaaggaaagtagtaaccaat 5258016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 9634637 - 9634693
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||    
T  9634637 ctcaaaatcacaccaatacaaactatgat-tgtggagcaaaggaaagtagtaaccaat 9634693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 19683703 - 19683760
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| ||||||||||| |||||||||||| || ||||||||||| |||||||||||    
T  19683703 ctcaaactcacaccaatacaaactatgatgtttggagcaaaggaaagtagtaaccaat 19683760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 29682706 - 29682657
Alignment:
Q  174 aaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaa 223  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  29682706 aaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaa 29682657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 29811236 - 29811164
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| |||||||| ||||||||||| ||| |||||| |||| ||||||||||| |||||||||||    
T  29811236 gttgtgaattcgaactcaaaactcacaccaatacaaaatatgatttgtggagcaaaggaaagtagtaaccaat 29811164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 32891449 - 32891386
Alignment:
Q  165 ttcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||| ||||||||||  ||||||||||||||| ||||||||||| |||||||||||    
T  32891449 ttcggactcaaaactcacaccaatg-aaactatgatgtgtggagcaaaggaaagtagtaaccaat 32891386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 31314795 - 31314748
Alignment:
Q  169 gactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaa 216  Q
    |||||||||||||||||||| |||||||||||| || |||||||||||    
T  31314795 gactcaaaatcacaccaatacaaactatgatgtatggagcaaaggaaa 31314748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 45095514 - 45095459
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||| ||||| ||||||||||||||  ||||||||||| |||||||||||    
T  45095514 caaaatcacatcaatacaaactatgatgtgtagagcaaaggaaagtagtaaccaat 45095459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 51351942 - 51352012
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||| | |||||||||    
T  51351942 gttgtgaattcggactcaaaatcacatcaata-atactacgatgtgtggagcaaaggaaagtggtaaccaat 51352012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 5260138 - 5260195
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| ||| |||||||  |||||||||||||| ||||||||||| |||||||||||    
T  5260138 ctcaaagtcaaaccaatacgaactatgatgtgtggagcaaaggaaagtagtaaccaat 5260195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 21350812 - 21350883
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||  |||  | |||||||||||||||||||| |||||||||||    
T  21350812 gttgtgaattcggactcaaaactcacaccaatg-aaataaagatgtgtgaagcaaaggaaagtagtaaccaat 21350883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 23391713 - 23391785
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| || ||||| ||||||||||| ||||||||||||||| || |||||||| || ||||||||    
T  23391713 gttgtgaattcgaacacaaaactcacaccaatacaaactatgatgtgtggagaaaaggaaagtaataaccaat 23391785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 23410132 - 23410200
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaac 224  Q
    |||| |||||||||| ||||| ||||| ||||| ||||||||||||||| | ||||||||| |||||||    
T  23410132 gttgtgaattcggacacaaaactcacatcaatacaaactatgatgtgtggatcaaaggaaagtagtaac 23410200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 47304623 - 47304575
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaa 210  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||| |||||    
T  47304623 gaattcggacttaaaatcacaacaatacaaactatgatgtgtggagcaa 47304575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 23197761 - 23197816
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||| |||||||||| ||| |||||| |||| ||||||||||| |||||||||||    
T  23197761 caaaaccacaccaatacaaagtatgatatgtggagcaaaggaaagtagtaaccaat 23197816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 23199954 - 23200009
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||| |||||||||| ||| |||||| |||| ||||||||||| |||||||||||    
T  23199954 caaaaccacaccaatacaaagtatgatatgtggagcaaaggaaagtagtaaccaat 23200009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 4160055 - 4160105
Alignment:
Q  152 aaatggttgcgaattcggactcaaaa-tcacaccaatataaactatgatgt 201  Q
    |||| |||| |||||||||||||||| ||||||||||| ||||||||||||    
T  4160055 aaattgttgtgaattcggactcaaaactcacaccaatacaaactatgatgt 4160105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 801436 - 801388
Alignment:
Q  178 tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||||||||||  || ||||||||||| ||||||||||| |||||||||    
T  801436 tcacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaacca 801388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 38671026 - 38671093
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaac 224  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  38671026 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaaatagtaac 38671093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 41648815 - 41648882
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaac 224  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  41648815 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaac 41648882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 48489798 - 48489727
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||    
T  48489798 gttgtgaattcggactcaaaatcacaccaataccaactatgatgtgtggagcaaaggaaagtagtaaccaat 48489727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 23555409 - 23555337
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  23555409 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 23555337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 36146213 - 36146284
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||| |||||||||||    
T  36146213 gttgtgaattcggactcaaaattacacaaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 36146284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 14069634 - 14069702
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaac 224  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  14069634 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaac 14069702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 14379662 - 14379730
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaac 224  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  14379662 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaac 14379730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 47675937 - 47676009
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  47675937 gttgtgaattcggacacaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 47676009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 8153704 - 8153633
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||| |||||| ||||    
T  8153704 gttgggaattcggactcaaaatcacactaatacaaactatgatgcgtggagcaaaggaaagtagtaatcaat 8153633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 25616222 - 25616151
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||| || ||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||||    
T  25616222 gttgtgaatacgtactcaaaatcacaccaatacaaactatgatgtatggagcaaaggaaagtagtaaccaat 25616151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 27348184 - 27348113
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||| ||| |||||||    
T  27348184 gttgtgaattcggactcaaaatcacacaaatacaaattatgatgtgtggagcaaaggaaagtagcaaccaat 27348113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 4179122 - 4179069
Alignment:
Q  175 aaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  4179122 aaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 4179069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 35854269 - 35854212
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||    
T  35854269 ctcaaaatcacacaaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 35854212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 4586529 - 4586457
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||  |||||||||| |||||||||||||||| ||||||||||| | |||||||||    
T  4586529 gttgtgaattcggactcaaatctcacaccaatgtaaactatgatgtgtggagcaaaggaaagtggtaaccaat 4586457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 18127014 - 18126942
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| || |||||||| |||||| ||||    
T  18127014 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagtaaaggaaagtagtaatcaat 18126942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 19502546 - 19502474
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||| ||||||||| |||||| |||| ||||||||||||||| ||||||||||| |||||||||||    
T  19502546 gttgtgaattcagactcaaaactcacactaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 19502474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 26417684 - 26417612
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||| |||||||||| |||| || |||||||| |||||||||||    
T  26417684 gttgtgaattcggactcaaaactcacaccaatacaaactatgatatgtggagtaaaggaaagtagtaaccaat 26417612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 31732769 - 31732841
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| |||||||| || ||||||||||||||| |||||| |||| |||||||||||    
T  31732769 gttgtgaattcggactcaaaactcacaccagtacaaactatgatgtgtggagcaaatgaaagtagtaaccaat 31732841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 23344331 - 23344261
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||| ||| |||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||    
T  23344331 gttgtgaattcagacccaaaatcacatcaata-aaactatgatgtgtggagcaaaggaaagtagtaaccaat 23344261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 495795 - 495860
Alignment:
Q  163 aattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| |||| ||| |||||| |||| ||||||||||| |||||||||||    
T  495795 aatttggactcaaaatcacactaatacaaattatgatatgtggagcaaaggaaagtagtaaccaat 495860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 29991406 - 29991349
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| ||||||||||| ||||||||||||||| ||||||| ||| |||||||||||    
T  29991406 ctcaaagtcacaccaatacaaactatgatgtgtggagcaaagaaaagtagtaaccaat 29991349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 41317239 - 41317311
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| |||||||  ||||||||||| |||||||||||| || ||||||||||| |||||||||||    
T  41317239 gttgtgaattcgaactcaaatctcacaccaatacaaactatgatgtttggagcaaaggaaagtagtaaccaat 41317311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 43864607 - 43864552
Alignment:
Q  162 gaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaa 216  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  43864607 gaattcggactcaaaactcacaccaatacaaactatgatgtgtggagtaaaggaaa 43864552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 47673750 - 47673817
Alignment:
Q  162 gaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||| | |||| |||| |||||||||||    
T  47673750 gaattcggacacaaaactcacaccaatacaaactatgatgtgtggaacaaaagaaagtagtaaccaat 47673817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 48491943 - 48491872
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||| |||||||||||||||||  |||||| ||||| | || |||||||| |||||||||||    
T  48491943 gttgtgaattcggattcaaaatcacaccaataccaactataatgtgcggagtaaaggaaagtagtaaccaat 48491872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 6430495 - 6430441
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaa 210  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  6430495 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaa 6430441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 12096972 - 12097037
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||||||||||| |||||||||||||||  || |  |||||||| |||||||||||    
T  12096972 gaattcggactcaaaatcacacc-atataaactatgatgcttggaataaaggaaagtagtaaccaat 12097037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 30024569 - 30024606
Alignment:
Q  163 aattcggactcaaaatcacaccaatataaactatgatg 200  Q
    |||||||||||||||||| |||||||||||||||||||    
T  30024569 aattcggactcaaaatcataccaatataaactatgatg 30024606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 48409156 - 48409103
Alignment:
Q  175 aaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||  || ||||||||||| ||||||||||| |||||||||||    
T  48409156 aaatcacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccaat 48409103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 4510340 - 4510394
Alignment:
Q  157 gttgcgaattcggactcaaaat-cacaccaatataaactatgatgtgtgaagcaa 210  Q
    |||| ||||||||||||||| | |||||||||| ||||||||||||||| |||||    
T  4510340 gttgtgaattcggactcaaatttcacaccaatacaaactatgatgtgtggagcaa 4510394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 4512182 - 4512236
Alignment:
Q  157 gttgcgaattcggactcaaaat-cacaccaatataaactatgatgtgtgaagcaa 210  Q
    |||| ||||||||||||||| | |||||||||| ||||||||||||||| |||||    
T  4512182 gttgtgaattcggactcaaatttcacaccaatacaaactatgatgtgtggagcaa 4512236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 2360778 - 2360827
Alignment:
Q  162 gaattcggactcaaaat-cacaccaatataaactatgatgtgtgaagcaa 210  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||| |||||    
T  2360778 gaatttggactcaaaattcacaccaatacaaactatgatgtgtggagcaa 2360827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 25766776 - 25766829
Alignment:
Q  175 aaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||  || ||||||||||| ||||||| ||| |||||||||||    
T  25766776 aaatcacaccaatacgaaatatgatgtgtggagcaaagaaaagtagtaaccaat 25766829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 1114020 - 1113960
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaa 216  Q
    |||| |||||| || |||||| ||||| ||||| ||||||||||||||| |||||||||||    
T  1114020 gttgtgaattccgaatcaaaactcacatcaatacaaactatgatgtgtggagcaaaggaaa 1113960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 24525322 - 24525378
Alignment:
Q  172 tcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||| ||||| |||||||||| |||| ||||||| ||| |||||| ||||    
T  24525322 tcaaaatcacatcaatacaaactatgatatgtgtagcaaagaaaagtagtaatcaat 24525378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 31105201 - 31105272
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| || ||||| ||||||||||| ||||||||||||||| || |||||||| |||||| ||||    
T  31105201 gttgtgaattcgaacacaaaactcacaccaata-aaactatgatgtgtggagtaaaggaaagtagtaatcaat 31105272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 833971 - 834042
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  833971 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 834042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 8550585 - 8550656
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  8550585 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 8550656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 28265360 - 28265431
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| |||||    
T  28265360 gttgggaattcggactcaaaatcacaccaatacaaactatgatgtgtggagtaaaggaaaatagtagccaat 28265431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 40122002 - 40122073
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||    
T  40122002 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgcgtggagcaaaggaaagtagtaaccaat 40122073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 45644159 - 45644230
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||    
T  45644159 gttgtgaattcggactcaaaatcacacaaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 45644230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 3189706 - 3189640
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  3189706 gaattcggacacaaaatcacaccaatataaactatgatgtctggagcaaaggaaagtagtaaccaat 3189640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 3198523 - 3198457
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  3198523 gaattcggacacaaaatcacaccaatataaactatgatgtctggagcaaaggaaagtagtaaccaat 3198457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 3207362 - 3207296
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  3207362 gaattcggacacaaaatcacaccaatataaactatgatgtctggagcaaaggaaagtagtaaccaat 3207296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 49918711 - 49918646
Alignment:
Q  163 aattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  49918711 aattcagactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 49918646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 37559665 - 37559737
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  37559665 gttgtgaattcggactcaaaactcacaccaatataaactatgatgtctggagcaaaggaaagtagtaaccaat 37559737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 196711 - 196782
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| ||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  196711 gttgtgaattcgtactcaaattcacaccaatacaaattatgatgtgtggagcaaaggaaaatagtaaccaat 196782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 31659605 - 31659534
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||| || |||| ||| |||||||||||    
T  31659605 gttgtgaattcggactcaaaatcacaccaatataaaatatgatgtgtggagaaaagaaaagtagtaaccaat 31659534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 13659157 - 13659222
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaa 227  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||| ||||||||||    
T  13659157 gaattcggactcaaaatcacatcaatacaaactataatgtgtggagcaaaggaaagtagtaaccaa 13659222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 4552449 - 4552521
Alignment:
Q  157 gttgcgaattcggactcaaaat-cacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||||| | |||||||||| ||||||||||| |||||| |||||||| |||||||||||    
T  4552449 gttgcgaattcggactcaaatttcacaccaatacaaactatgatgcgtgaagtaaaggaaagtagtaaccaat 4552521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 10925594 - 10925518
Alignment:
Q  152 aaatggttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||| ||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||| |||||| ||||    
T  10925594 aaattgttgtgaattcggactcaaaatcacaacaatacaaactatgttgtgtggagcaaaggaaagtagtaatcaat 10925518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 3846922 - 3846993
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||| || |||| ||||||||||||||| || |||||||| |||||||||||    
T  3846922 gttgtgaattcggactcaaaatcatactaatacaaactatgatgtgtggagtaaaggaaagtagtaaccaat 3846993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 37503363 - 37503422
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaa 216  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| || ||||||||    
T  37503363 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagtaaaggaaa 37503422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 50166981 - 50167052
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||| ||| ||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||    
T  50166981 gttgtgaactcgaactcaaaatcacaccaaaacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 50167052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 50169032 - 50169087
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||| |||||||||||||||||||||| |||| |||||||||||    
T  50169032 caaaatcacaccaatacaaactatgatgtgtgaagcaaatgaaagtagtaaccaat 50169087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 13137787 - 13137853
Alignment:
Q  163 aattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||| |||||||||||    
T  13137787 aattcggactcaaaactcacaccaatacaaattatgatgtgtggagcaaaggaaagtagtaaccaat 13137853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 20763021 - 20762964
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||    
T  20763021 ctcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtattaaccaat 20762964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 23555072 - 23555144
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaatg 229  Q
    |||| |||||||||||||||||| |||||||| |||| |||||||||| ||||||| ||| |||||| |||||    
T  23555072 gttgtgaattcggactcaaaatcgcaccaatagaaacaatgatgtgtggagcaaagaaaagtagtaatcaatg 23555144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 28220027 - 28220099
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||||| ||| |||||||||||    
T  28220027 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggaacaaagaaaattagtaaccaat 28220099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 28223222 - 28223294
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||| ||||||| ||||||||||||||| |||||| |||| |||||||||||    
T  28223222 gttgtgaattcggactcaaaactcagaccaatacaaactatgatgtgtggagcaaacgaaagtagtaaccaat 28223294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 1833875 - 1833804
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||| |||||||||||| |||||||||| |||| || |||||||| | |||||||||    
T  1833875 gttgtgaattcggactcaatatcacaccaatacaaactatgatctgtggagtaaaggaaagtcgtaaccaat 1833804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 30476247 - 30476319
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| |||||||| ||||||||||| ||||||| ||||||| || |||||||| |||||||||||    
T  30476247 gttgtgaattcgaactcaaaactcacaccaatacaaactataatgtgtggagtaaaggaaagtagtaaccaat 30476319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 44455527 - 44455456
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| ||||||||||||||||||| |||||||||| |||| || |||| ||| | |||||||||    
T  44455527 gttgtgaattcgtactcaaaatcacaccaatacaaactatgatatgtggagaaaagaaaagtggtaaccaat 44455456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 927786 - 927855
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||| ||  ||||||||||||||||| || ||||| || | |||||||||    
T  927786 gttgtgaattcggactcaaaatcacatca--ataaactatgatgtgtggagtaaagggaagtggtaaccaat 927855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 3157205 - 3157161
Alignment:
Q  184 caatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||    
T  3157205 caatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 3157161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 16455983 - 16455912
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||| ||||||||  |||| | ||| |||| |||||| |||| |||||||||||    
T  16455983 gttgtgaattcggactcaaaattacaccaatgaaaacaaagatttgtgtagcaaatgaaagtagtaaccaat 16455912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 13316167 - 13316224
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||||||  || ||| ||||||| ||||||||||| |||||| ||||    
T  13316167 ctcaaaatcacaccaatacgaaatataatgtgtggagcaaaggaaagtagtaatcaat 13316224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 51765750 - 51765697
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    ||||| ||||||||||  || ||||||||||| ||||||||||| |||||||||    
T  51765750 caaaaccacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaacca 51765697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 41361277 - 41361218
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaa 216  Q
    |||| |||||||||||||||| ||  ||||||| ||||||||||||||| |||||||||||    
T  41361277 gttgtgaattcggactcaaaactctaaccaata-aaactatgatgtgtggagcaaaggaaa 41361218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 41366424 - 41366490
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  41366424 gaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 41366490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 5689634 - 5689563
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  5689634 gttgtgaattccgactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 5689563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 6599332 - 6599261
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||||||||||    
T  6599332 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtagagcaaaggaaagtagtaaccaat 6599261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 6674785 - 6674714
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||||||||||    
T  6674785 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtagagcaaaggaaagtagtaaccaat 6674714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 12702432 - 12702503
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||    
T  12702432 gttgtgaattcggactcaaaatcacatcaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 12702503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 30143707 - 30143636
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  30143707 gttgtgaattcagactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 30143636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 15213154 - 15213082
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  15213154 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 15213082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 4732025 - 4731957
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacc 225  Q
    |||| ||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||    
T  4732025 gttgtgaattcgaactcaaaatcacaccaatacaaacaatgatgtgtggagcaaaggaaagtagtaacc 4731957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 33352517 - 33352446
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||| || ||||||||    
T  33352517 gttgtgaattcgtactcaaaatcacaccaatataaattatgatatgtggagcaaaggaaagtaataaccaat 33352446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 18105882 - 18105948
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| ||||||||||||||| |||| ||||||||||||||  ||||||||||| |||||||||||    
T  18105882 gaattcagactcaaaatcacactaatacaaactatgatgtgtagagcaaaggaaagtagtaaccaat 18105948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 19945174 - 19945231
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  19945174 ctcaaaatcacaccaatacaaactttgatgtgtggagcaaaggaaagtagtaaccaat 19945231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 31218606 - 31218553
Alignment:
Q  175 aaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  31218606 aaatcacaccaatataaactatgatgtgtggagcaaaggaaagtagcaaccaat 31218553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 44304208 - 44304151
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||    
T  44304208 ctcaaaatcacaccaatacatactatgatgtgtggagcaaaggaaagtagtaaccaat 44304151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 1746028 - 1746091
Alignment:
Q  165 ttcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||| ||||||||||||||||||  |||||||||||||| || |||||||| |||||||||||    
T  1746028 ttcggtctcaaaatcacaccaatacgaactatgatgtgtggagtaaaggaaagtagtaaccaat 1746091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 3303476 - 3303543
Alignment:
Q  162 gaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||| | |||||||||    
T  3303476 gaattcggactcaaatctcacaccaatacaaactatgatgtgtggagcaaaggaaagtggtaaccaat 3303543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 8154146 - 8154076
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||| ||||||||||||| |||| |||||||||||||||||| |||||||| |||||| ||||    
T  8154146 gttgtgaattcgggctcaaaatcacactaata-aaactatgatgtgtgaagtaaaggaaagtagtaatcaat 8154076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 34254149 - 34254203
Alignment:
Q  174 aaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  34254149 aaaaacacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 34254203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 34256325 - 34256379
Alignment:
Q  174 aaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  34256325 aaaaacacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 34256379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 17983002 - 17982949
Alignment:
Q  175 aaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||| ||||||||||||||| ||||||||||  |||||||||||    
T  17983002 aaatcacaccaatacaaactatgatgtgtggagcaaaggaacgtagtaaccaat 17982949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 4734074 - 4734002
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaacta-tgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||| ||||||| ||||||||| |||| | ||||||||| ||||||||||| |||||||||||    
T  4734074 gttgtgaattcggattcaaaattacaccaatacaaaccaatgatgtgtggagcaaaggaaagtagtaaccaat 4734002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 4743028 - 4743100
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||  ||||||||||| ||||||| ||||||| ||||||||||| | |||||||||    
T  4743028 gttgtgaattcggactcaaatctcacaccaatacaaactataatgtgtggagcaaaggaaagtggtaaccaat 4743100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 1345177 - 1345248
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||| |||||||||||| |||| |||| || || |||| ||||||||||| |||||||||||    
T  1345177 gttgtgaattcggattcaaaatcacacaaatacaaacaataatctgtggagcaaaggaaagtagtaaccaat 1345248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 42498546 - 42498491
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||| ||| |||||||    
T  42498546 caaaatcacaccaatacaaaatatgatgtgtggagcaaaggaaagtagcaaccaat 42498491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 43036785 - 43036718
Alignment:
Q  162 gaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||| |||||||||| ||||||||||| |||  |||||||||| ||||||||||| |||||||||||    
T  43036785 gaatttggactcaaaactcacaccaatacaaaaaatgatgtgtggagcaaaggaaagtagtaaccaat 43036718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 4162831 - 4162761
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||| |||| || |||| |||||||| | ||||||| ||||| |||||||||    
T  4162831 gttgtgaattcggactcaaaatcataccagta-aaacaatgatgtgaggagcaaagaaaaatggtaaccaat 4162761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 7493351 - 7493296
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaa 215  Q
    |||| ||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||    
T  7493351 gttgtgaattcggac--aaaatcacaccaata-aaactatgatgtgtggagcaaaggaa 7493296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 8965493 - 8965562
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||| ||| ||| ||||||  |||||||||||    
T  8965493 gttgtgaattcgaactcaaaatcacaccaata-aaactatgatgcgtggagc-aaggaacgtagtaaccaat 8965562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 40321441 - 40321383
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaa 216  Q
    |||| |||||| ||||||||||||||| |||| |||||||||| |||| |||||||||||    
T  40321441 gttgtgaattccgactcaaaatcacac-aatacaaactatgatatgtggagcaaaggaaa 40321383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 27811631 - 27811574
Alignment:
Q  173 caaaatcacaccaatataaactat--gatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||| |||||||  |||||||| || |||||||| |||||||||||    
T  27811631 caaaatcacaccaatacaaactatatgatgtgtggaggaaaggaaagtagtaaccaat 27811574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 3073686 - 3073748
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||||||||||||||| |||||||  ||||||||| || |||| ||||||||||| || ||||||    
T  3073686 gaattcggactcaaaaacacacca--ataaactatcatatgtggagcaaaggaaagtaataacca 3073748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 11711806 - 11711875
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagc-aaaggaaaatagtaaccaa 227  Q
    |||| ||||||||||||||||| ||||||  |||||||  |||||||| ||| |||||||| ||||||||||    
T  11711806 gttgtgaattcggactcaaaattacacca--ataaacttagatgtgtggagcaaaaggaaagtagtaaccaa 11711875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 19491504 - 19491563
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaa 216  Q
    |||| |||||||||||||||| ||  ||||||| ||||||||||||||| |||||||||||    
T  19491504 gttgtgaattcggactcaaaactctaaccaata-aaactatgatgtgtggagcaaaggaaa 19491563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 26954092 - 26954163
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||    
T  26954092 gttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaagaaagtagtaaccaat 26954163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 28137212 - 28137283
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  28137212 gttgtgaattcggtctcaaaatcacaccaatacaaactatgacgtgtggagcaaaggaaagtagtaaccaat 28137283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 30834343 - 30834406
Alignment:
Q  165 ttcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||| ||||||||||||||||||  || ||||||||||| |||||||||||||||||||||||    
T  30834343 ttcggtctcaaaatcacaccaatacgaaatatgatgtgtggagcaaaggaaaatagtaaccaat 30834406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 33160169 - 33160223
Alignment:
Q  174 aaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  33160169 aaaatcataccaatacaaactatgatgtgtggagcaaaggaaaatagtaaccaat 33160223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 5408885 - 5408942
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  5408885 ctcaaagtcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 5408942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 5413210 - 5413267
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  5413210 ctcaaagtcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 5413267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 16569388 - 16569316
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaata-taaactatgatgtgtgaagc-aaaggaaaatagtaaccaa 227  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||| ||||||||||    
T  16569388 gttgtgaattcggactcaaaatcacaccaatattcaactatgatgtgtggagcaaaaggaaagtagtaaccaa 16569316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 3038733 - 3038799
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||  ||||||||||| || ||||||||    
T  3038733 gaattcgaactcaaaatcagaccaatacaaactatgatgtgtcgagcaaaggaaagtaataaccaat 3038799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 16452143 - 16452200
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||||||||||  |||||||||||||| || |||||||| |||||||||||    
T  16452143 ctcaaaatcacaccaatacgaactatgatgtgtggagtaaaggaaagtagtaaccaat 16452200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 2171342 - 2171397
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||||| |||||||||||  |||||||||||||| ||||||||||| |||||||||    
T  2171342 ctcaaagtcacaccaatacgaactatgatgtgtggagcaaaggaaagtagtaacca 2171397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 31404484 - 31404547
Alignment:
Q  165 ttcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||  |||||||| ||||||  |||||||||||||| |||||||||||||||||| ||||    
T  31404484 ttcggacaaaaaatcactccaatacgaactatgatgtgtggagcaaaggaaaatagtaatcaat 31404547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 602904 - 602958
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaa 210  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  602904 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaa 602958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 9182857 - 9182903
Alignment:
Q  182 accaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  9182857 accaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 9182903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 22963522 - 22963568
Alignment:
Q  169 gactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaa 215  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  22963522 gactcaaaatcacaccaatacaaactatgatgtgtggagctaaggaa 22963568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 23824871 - 23824825
Alignment:
Q  169 gactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaa 215  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  23824871 gactcaaaatcacaccaatacaaactatgatgtgtggagctaaggaa 23824825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 257241 - 257304
Alignment:
Q  152 aaatggttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaa 216  Q
    |||| |||| ||||||| |||||||||||||||||||| || ||| ||||||| |||||||||||    
T  257241 aaattgttgtgaattcgaactcaaaatcacaccaatat-aattataatgtgtggagcaaaggaaa 257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 5406025 - 5406075
Alignment:
Q  178 tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||| ||||||||||||||| || |||| ||| |||||||||||    
T  5406025 tcacaccaatacaaactatgatgtgtggagtaaagaaaagtagtaaccaat 5406075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 5410350 - 5410400
Alignment:
Q  178 tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    ||||||||||| ||||||||||||||| || |||| ||| |||||||||||    
T  5410350 tcacaccaatacaaactatgatgtgtggagtaaagaaaagtagtaaccaat 5410400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 3072579 - 3072627
Alignment:
Q  178 tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||||||||||  || ||||||||||| ||||||||||| |||||||||    
T  3072579 tcacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaacca 3072627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 14521479 - 14521534
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaag 212  Q
    |||| |||||||||||||||| ||||||||||  ||||||||||||||| |||||||    
T  14521479 gttgtgaattcggactcaaaactcacaccaatg-aaactatgatgtgtggagcaaag 14521534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 17763345 - 17763313
Alignment:
Q  178 tcacaccaatataaactatgatgtgtgaagcaa 210  Q
    ||||||||||||||||||||||||||| |||||    
T  17763345 tcacaccaatataaactatgatgtgtggagcaa 17763313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 21589284 - 21589252
Alignment:
Q  178 tcacaccaatataaactatgatgtgtgaagcaa 210  Q
    ||||||||||||||||||||||||||| |||||    
T  21589284 tcacaccaatataaactatgatgtgtggagcaa 21589252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 5887236 - 5887307
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||    
T  5887236 gttgtgaattcggactcaaaatcacaccaatacaaactatgatatgtggagcaaaggaaagtagtaaccaat 5887307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 534126 - 534054
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  534126 gttgtgaattcggactcaaaactcacaccaatagaaactatgatgtgtggagcaaaggaaagtagtaaccaat 534054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 8565749 - 8565820
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  8565749 gttgtgaatttggattcaaaatcacactaatataaactatgatgtgtggagcaaaggaaagtagtaaccaat 8565820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 31183340 - 31183273
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaac 224  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||    
T  31183340 gttgtgaattcggactcaaaatcacaccaatacaaaccatgatgtgtggagcaaaggaaagtagtaac 31183273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 33832045 - 33831975
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaa 227  Q
    |||| ||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||| ||||||||||    
T  33832045 gttgtgaattcggactcaaaattacacaaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaa 33831975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 16649636 - 16649705
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||| ||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| |||||||||    
T  16649636 gttgtgaattcgaactcaaaatcataccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 16649705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 30682723 - 30682795
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  30682723 gttgtgaatacggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 30682795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 538383 - 538316
Alignment:
Q  162 gaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||    
T  538383 gaattcagactcaaaactcacaccaatataaactatgatgtgtggagcaaaggaaagtaataaccaat 538316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 13240118 - 13240047
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| |||||||||||||| |||| ||||||||||||||| || |||||||| |||||||||||    
T  13240118 gttgtgaattcgaactcaaaatcacactaatacaaactatgatgtgtggagtaaaggaaagtagtaaccaat 13240047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 42428237 - 42428303
Alignment:
Q  163 aattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  42428237 aattcgaactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 42428303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 30182941 - 30182884
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||    
T  30182941 ctcaaaatcacaccaaaacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 30182884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 3075550 - 3075622
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||| || ||||||||    
T  3075550 gttgtgaattcggactaaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtaataaccaat 3075622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 28750456 - 28750528
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||| |||||||||| ||||||||||| ||| ||||||||||| ||||||||||| |||||||||||    
T  28750456 gttgtgaatttggactcaaaactcacaccaatacaaattatgatgtgtggagcaaaggaaagtagtaaccaat 28750528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 39468349 - 39468421
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| |||||||| | ||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  39468349 gttgtgaattcgaactcaaaacttacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaat 39468421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 19806728 - 19806658
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||| | |||||||| |||||||||||||||  |||||||||| |||||||||||    
T  19806728 gttgtgaattcggactcaaaa-ctcaccaatacaaactatgatgtgtggggcaaaggaaagtagtaaccaat 19806658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 16409830 - 16409777
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||    
T  16409830 caaaatcacaccaatacaaagtatgatgtgtggagcaaaggaaagtagtaacca 16409777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 25413112 - 25413056
Alignment:
Q  172 tcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||||  |||||||||||||| ||||||||||| |||||| ||||    
T  25413112 tcaaaatcacaccaatacgaactatgatgtgtggagcaaaggaaattagtaatcaat 25413056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 42426036 - 42426108
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| |||||||| |||||| |||| ||||||||||||||| |||||| |||| |||||||||||    
T  42426036 gttgtgaattcgaactcaaaactcacacaaatacaaactatgatgtgtggagcaaaagaaagtagtaaccaat 42426108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 9789037 - 9789092
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    ||||||| |||||||||| ||| ||||||||||| ||||||||||| |||||||||    
T  9789037 ctcaaaaccacaccaatacaaagtatgatgtgtggagcaaaggaaagtagtaacca 9789092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 32637186 - 32637123
Alignment:
Q  162 gaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaac 224  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||| || |||||||| |||||||    
T  32637186 gaattcggattcaaaactcacaccaatacaaactatgatgtgtggagtaaaggaaagtagtaac 32637123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 36073861 - 36073915
Alignment:
Q  174 aaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||| ||||||||||||||| ||||||||||| || ||||||||    
T  36073861 aaaaccacaccaatacaaactatgatgtgtggagcaaaggaaagtaataaccaat 36073915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 40147609 - 40147555
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaa 210  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  40147609 gttgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaa 40147555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 13488568 - 13488496
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||||||||||||  ||||||||||| ||| ||||||||||| || |||||||| || ||||||||    
T  13488568 gttgtgaattcggactcaaatctcacaccaatacaaaatatgatgtgtggagtaaaggaaagtaataaccaat 13488496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 13343411 - 13343356
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| |||||| ||||  |||||||||||||| ||||||||||| |||||||||||    
T  13343411 caaagtcacactaatacgaactatgatgtgtggagcaaaggaaagtagtaaccaat 13343356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 18441457 - 18441512
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    ||||||| |||||||||| ||| || |||||||| ||||||||||| |||||||||    
T  18441457 ctcaaaaccacaccaatacaaagtaagatgtgtggagcaaaggaaagtagtaacca 18441512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 148918 - 148983
Alignment:
Q  162 gaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaa 227  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||| ||||||||||    
T  148918 gaattcggactcaaaatcacatcaatacaaactataatgtgtggagcaaaggaaagtagtaaccaa 148983  T

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Target: scaffold0066 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 20217 - 20288
Alignment:
Q  157 gttgcgaattcggactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaatg 229  Q
    |||| ||||||||||||||  ||| ||||||| ||||||||||||||| ||||||||||  ||||||||||||    
T  20217 gttgtgaattcggactcaac-tcataccaatacaaactatgatgtgtggagcaaaggaaggtagtaaccaatg 20288  T

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Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 11919 - 11864
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||||| |||||||||||  |||||||||||||| ||||||||||| |||||||||    
T  11919 ctcaaagtcacaccaatacgaactatgatgtgtggagcaaaggaaagtagtaacca 11864  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 434887 - 434832
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaacca 226  Q
    |||||| |||||||||||  |||||||||||||| ||||||||||| |||||||||    
T  434887 ctcaaagtcacaccaatacgaactatgatgtgtggagcaaaggaaagtagtaacca 434832  T

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Target: scaffold0491 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 10976 - 11033
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaatga 230  Q
    ||||| |||||||||| ||| |||||| |||| ||||||||||| |||||||||||||    
T  10976 caaaaccacaccaatacaaagtatgatatgtggagcaaaggaaagtagtaaccaatga 11033  T

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Target: scaffold0491; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 8550 - 8607
Alignment:
Q  173 caaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaatga 230  Q
    ||||| |||||||||| ||| ||||||  ||| ||||||||||| |||||||||||||    
T  8550 caaaaccacaccaatacaaagtatgatacgtggagcaaaggaaagtagtaaccaatga 8607  T

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Target: scaffold1668 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 1302 - 1374
Alignment:
Q  157 gttgcgaattcggactcaaaa-tcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||| ||||||| || ||||| ||||||||||| || |||||||||||| ||||||||||| |||||| ||||    
T  1302 gttgtgaattcgaacacaaaactcacaccaatacaatctatgatgtgtggagcaaaggaaagtagtaatcaat 1374  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 114955 - 114899
Alignment:
Q  173 caaaatcacaccaatataaa-ctatgatgtgtgaagcaaaggaaaatagtaaccaat 228  Q
    |||||||||||||||| ||| |||||||||||| ||||||||||| || ||||||||    
T  114955 caaaatcacaccaatacaaaactatgatgtgtggagcaaaggaaagtaataaccaat 114899  T

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Target: scaffold1519 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 1269 - 1210
Alignment:
Q  171 ctcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaaatagtaaccaatga 230  Q
    |||||| |||||||||||  |||||||||||||| | ||||||| | |||||||||||||    
T  1269 ctcaaagtcacaccaatacgaactatgatgtgtggaacaaaggatagtagtaaccaatga 1210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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