View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0398_low_13 (Length: 246)
Name: NF0398_low_13
Description: NF0398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0398_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 7779236 - 7779443
Alignment:
| Q |
1 |
tcacgcgatcatttgaagaccaagaagcaagggagtagtagtagtaaaagatcttcatcatatcagtcaaatggcaatcatgaaaataaagctgccattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7779236 |
tcacgcgatcatttgaagaccaagaagcaagggagtagtagtagtaaaagatcttcatcatatcagtcaaatggcaatcatgaaaataaagctgccattg |
7779335 |
T |
|
| Q |
101 |
cgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataattggtgattcccagaaaaataagagaaaaaagatcgattcatcgcagtc |
200 |
Q |
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| T |
7779336 |
cgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataattggtgattcccagaaaaataagagaaaaaagatcgattcatcgcagtc |
7779435 |
T |
|
| Q |
201 |
tgacaaag |
208 |
Q |
| |
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|||||||| |
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| T |
7779436 |
tgacaaag |
7779443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 7768233 - 7768379
Alignment:
| Q |
1 |
tcacgcgatcatttgaagaccaagaagcaagggagtagtagtagtaaaagatcttcatcatatcagtcaaatggcaatcatgaaaataaagctgccattg |
100 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||| |||| ||||||| |||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
7768233 |
tcacgcgatcatttgaagacagagaagcaaaggagtagcagta---aaagatc---atcatacaagtcaaatgacaatcctgaaaataaagctgccattt |
7768326 |
T |
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| Q |
101 |
cgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataatt |
153 |
Q |
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| T |
7768327 |
cttatgtgaagaatatgcatggttcaaggagagatgcatttttgaacataatt |
7768379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 7774431 - 7774632
Alignment:
| Q |
1 |
tcacgcgatcatttgaagaccaagaagcaagggagtagtagtagtaaaagatcttcatcatatcagtcaaatggcaatcatgaaaataaagctgccattg |
100 |
Q |
| |
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|||||||||||| |||||| |||||||| ||||||| |||| |||||||||| | ||| ||||||||| ||||| | |||||||||||| ||||| |
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| T |
7774431 |
tcacgcgatcatacgaagacagagaagcaacggagtagcagta---aaagatcttcctattataagtcaaatgacaatcctcaaaataaagctgacattg |
7774527 |
T |
|
| Q |
101 |
cgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataattggtg-attcccagaaaaataagagaaaaaagatcgattcatcgcagt |
199 |
Q |
| |
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| | | ||||||||||| || ||||||| |||| | ||||||| || |||| |||| || ||||| |||| ||||| |||||| ||||| ||||||| |
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| T |
7774528 |
catatcttaagaatatgaatggttcaagaagaggtcgatttttggacttaatcggtgcatccccag-aaaacaagag---aaagatggattcgtcgcagt |
7774623 |
T |
|
| Q |
200 |
ctgacaaag |
208 |
Q |
| |
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||||||||| |
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| T |
7774624 |
ctgacaaag |
7774632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 12815250 - 12815125
Alignment:
| Q |
83 |
aaaataaagctgccattgcgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataattggtgattc-ccagaaaaataagagaaaaa |
181 |
Q |
| |
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||||||||||||||| || | | ||| |||||||| | |||||||||||| |||||||||| || || |||||||||| |||||||| |||||||||| |
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| T |
12815250 |
aaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccagaaaac-aagagaaaaa |
12815152 |
T |
|
| Q |
182 |
agatcgattcatcgcagtctgacaaag |
208 |
Q |
| |
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||| | ||||||||| |||||||||| |
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| T |
12815151 |
agactggttcatcgcattctgacaaag |
12815125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 12752290 - 12752165
Alignment:
| Q |
83 |
aaaataaagctgccattgcgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataattggtgattc-ccagaaaaataagagaaaaa |
181 |
Q |
| |
|
||||||||||||||| || | | ||| |||||||| | |||||||||||| |||||||||| || || |||| ||||| |||||||| |||||||||| |
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| T |
12752290 |
aaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggcgattctccagaaaac-aagagaaaaa |
12752192 |
T |
|
| Q |
182 |
agatcgattcatcgcagtctgacaaag |
208 |
Q |
| |
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||| | ||||||||| |||||||||| |
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|
| T |
12752191 |
agactggttcatcgcattctgacaaag |
12752165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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