View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0398_low_15 (Length: 226)
Name: NF0398_low_15
Description: NF0398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0398_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 51078030 - 51078257
Alignment:
| Q |
1 |
ctagacaggatctgagtgagtgggctttgtactcgtttgttggtgcttctctcctctgccgttacgttacat--------acagagtcgcacatgcttcc |
92 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
51078030 |
ctagacaggatctgagtgagttggctttgtactcgtttgttggtgcttctctcctctgccgttacgttacgttacatactacagagtcgcacatgcttct |
51078129 |
T |
|
| Q |
93 |
aaacacccacccagcaactcagtaatagtattagcagtcgagtacaacacagaaaaattcaattcaattcaataaacccctccatcatcatttattaatt |
192 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
51078130 |
aaacacccacccaacaactcagtaatagtattagcagtggagtacaacacagaaaaattaaattaaattcaataaacccctccatcatcatttattaatt |
51078229 |
T |
|
| Q |
193 |
cttcccttttcttcgcaagctctgatct |
220 |
Q |
| |
|
|||||||||||||| || ||||||||| |
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|
| T |
51078230 |
cttcccttttcttctgaatctctgatct |
51078257 |
T |
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