View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0398_low_2 (Length: 682)

Name: NF0398_low_2
Description: NF0398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0398_low_2
NF0398_low_2
[»] chr2 (1 HSPs)
chr2 (6-653)||(8018131-8018779)


Alignment Details
Target: chr2 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 6 - 653
Target Start/End: Original strand, 8018131 - 8018779
Alignment:
Q  6 agtagcaaaggtaaagcattcaaagaaagaatgaaaaagtaaatgtatgcatttgaagaagaaaaactagcataatagtatcatcagatcacttttgaag 105  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018131 agtagaaaaggtaaagcattcaaagaaagaatgaaaaggtaaatgtatgcatttgaagaagaaaaactagcataatagtatcatcagatcacttttgaag 8018230  T
Q  106 aaggttcaaaagtgagtgagtggggactattgcagtaatagctgtatgtagagagagagggtcccactgatcgagcattaacaatgagcgtaactaccac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018231 aaggttcaaaagtgagtgagtggggactattgcagtaatagctgtatgtagagagagagggtcccactgatcgagcattaacaatgagcgtaactaccac 8018330  T
Q  206 atttacactcatcaaatgcacttcacattctttcactacttttttgacaatacaagctagtttcacacgagtcacgcgtgtgagagacagcaatactatn 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8018331 atttacactcatcaaatgcacttcacattctttcactacttttttgacaatacaagctagtttcacacgagtcacgcgtgtgagagacagcaatactata 8018430  T
Q  306 nnnnnnngacatgtttgtgcgtgttgaaaaggtttgtgttttgtgttgttggcgctaactcatttggcagttggttagatggagacatttattactatgg 405  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018431 aaaaaaagacatgtttgtgcgtgttgaaaaggtttgtgttttgtgttgttggcgctaactcatttggcagttggttagatggagacatttattactatgg 8018530  T
Q  406 tcagttttttggatatgtttttattttggaagttcaatagaggtgttactcctaccagtttggtttatttatcacactcatgcatttaattcaagagaag 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018531 tcagttttttggatatgtttttattttggaagttcaatagaggtgttactcctaccagtttggtttatttatcacactcatgcatttaattcaagagaag 8018630  T
Q  506 aggtaggagta-nnnnnnnggttaatattaacctattttaagtatggtgaaatatattttatacaaaccttgtttatcacttcccattaatatattgttg 604  Q
    |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018631 aggtaggagtattttttttggttaatattaacctattttaagtatggtgaaatatattttatacaaaccttgtttatcacttcccattaatatattgttg 8018730  T
Q  605 tttgtttttgttgaaagaatgactactactagtacatttttgttgctta 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8018731 tttgtttttgttgaaagaatgactactactagtacatttttgttgctta 8018779  T

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