View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0400_high_7 (Length: 262)
Name: NF0400_high_7
Description: NF0400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0400_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 44954914 - 44955071
Alignment:
| Q |
79 |
gtcaaagttaatgtcattcatgtgagttttctaatttcaattttcttttcatagctattagaaataatatagtttattagtgtgttagttttttgcaatg |
178 |
Q |
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| T |
44954914 |
gtcaaagttgatgtcattcatgtgagttttctaatttcaattttcttttcatagctattagaaataatatagtttattagtgtgttagttttttgcaatg |
44955013 |
T |
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| Q |
179 |
agataccaaagtaactaataattagttaaatatatgatagttaccggtactttgttag |
236 |
Q |
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| T |
44955014 |
agataccaaagtaactaataattagttaaatatatgatagttaccggtactttgttag |
44955071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 43563726 - 43563618
Alignment:
| Q |
41 |
ccatgcactcttatcttgctgaatctggtgtcactggggtcaaagttaatgtcattcatgtgagttttctaatttcaattttcttttcatagctattaga |
140 |
Q |
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| T |
43563726 |
ccatgcactcttatcttgctgaatctggtgtcaccggagtcaaaattgacgtcattcatgtgagttttctaatgttattttccttttcattgctattagg |
43563627 |
T |
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| Q |
141 |
aataatata |
149 |
Q |
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|||| |||| |
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| T |
43563626 |
aatattata |
43563618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 36431705 - 36431623
Alignment:
| Q |
41 |
ccatgcactcttatcttgctgaatctggtgtcactggggtcaaagttaatgtcattcatgtgagttttctaatttcaattttc |
123 |
Q |
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| T |
36431705 |
ccatgcactcttttcttgctgaatctggtgtcacaggagtcaaagttgatgtcattcatgtgagttctctaatttgaattttc |
36431623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 43974849 - 43974940
Alignment:
| Q |
41 |
ccatgcactcttatcttgctgaatctggtgtcactggggtcaaagttaatgtcattcatgtgagttttctaatttcaattttcttttcatag |
132 |
Q |
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||||||||||||||||||||||||||||| |||| || ||||||||| ||||||| |||||||||||| |||||| | |||||||| ||||| |
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| T |
43974849 |
ccatgcactcttatcttgctgaatctggtatcacaggagtcaaagttgatgtcatgcatgtgagttttttaattttatttttctttacatag |
43974940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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